Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P11
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            34   0.17 
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)               28   8.6  
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -1

Query: 579 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 400
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 399 SRRPP*FVLSP-AGPRXPGAVGLPGQFA 319
              PP  V +P +G   P A   P  FA
Sbjct: 476 VAAPPPSVFAPSSGVPTPVAAPPPSVFA 503



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = -1

Query: 579 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 400
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 399 SRRPP*FVLSP-AGPRXPGAVGLPGQFAA 316
              PP  V +P +G   P A   P  FA+
Sbjct: 418 VAAPPPSVFAPSSGVPTPVAAPPPSVFAS 446



 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 579 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAA 421
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   +A
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSA 573


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 499 QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS*LVIKKIPSRHHRS 630
           + H P   R      RS+  RRRR  R P      + PS HHRS
Sbjct: 212 RSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +1

Query: 220 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 345
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 466  DSNRLRSVGS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS 588
            D+ +LR V    E PPL  RYG  G+  +K R R PG+ P+
Sbjct: 2322 DAIKLRRVPLKAEKPPLRGRYG--GVHRRK-RGRPPGQGPT 2359


>SB_27519| Best HMM Match : NIPSNAP (HMM E-Value=5.2e-14)
          Length = 312

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 419 PHSYWPSLDVHRSLYCPLRVPGXLVP*ACPVNLP 318
           PHS W SL V + ++ P R    LVP   P++ P
Sbjct: 9   PHSEWRSLVVVQQVWTPRRTTVYLVPPLGPLHPP 42


>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 19  HYREFLKX*FLSQAAKLTQVKMNSKLLYFFATVLVCVNAEVYWEDEEGYPVSGQFSKR 192
           HY   LK  + SQ   + Q++M    + F A+    +N E Y      Y VSG+ + R
Sbjct: 396 HYHRNLKIGYFSQH-HVDQLQMTQCAIEFLASRFPGMNTEAYRHQLGRYGVSGELATR 452


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 202 DVTWDKQVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR-XPGTRR 369
           D++ D ++  GK   T+ +  +    K+ YN+ + N + G  T   +GT    G+RR
Sbjct: 166 DISEDPKISKGKSTATIFREQENE-KKSKYNQRVMNVEMGTFTPLVFGTNGRNGSRR 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,841,853
Number of Sequences: 59808
Number of extensions: 531080
Number of successful extensions: 1341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)