Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P11
         (870 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi...    31   4.1  
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.            31   4.1  
M63730-1|AAA51839.1|  349|Homo sapiens BPAG2 protein.                  31   4.1  
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph...    31   4.1  
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph...    31   4.1  
BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protei...    30   9.5  
BC009354-1|AAH09354.2|  948|Homo sapiens RAB6IP1 protein protein.      30   9.5  
AK025499-1|BAB15155.1|  872|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AB209378-1|BAD92615.1|  317|Homo sapiens T-box 2 variant protein.      30   9.5  
AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.     30   9.5  

>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
           antigen 2/type XVII collagen protein.
          Length = 1497

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 KPVTTERSSMMTAAN*PGRPTAPGXLGPAG 370
           K VT+E SSM+T    PG P A G  GP G
Sbjct: 807 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 836


>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
          Length = 1532

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 KPVTTERSSMMTAAN*PGRPTAPGXLGPAG 370
           K VT+E SSM+T    PG P A G  GP G
Sbjct: 842 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 871


>M63730-1|AAA51839.1|  349|Homo sapiens BPAG2 protein.
          Length = 349

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 KPVTTERSSMMTAAN*PGRPTAPGXLGPAG 370
           K VT+E SSM+T    PG P A G  GP G
Sbjct: 300 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 329


>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
           protein.
          Length = 1497

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 KPVTTERSSMMTAAN*PGRPTAPGXLGPAG 370
           K VT+E SSM+T    PG P A G  GP G
Sbjct: 807 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 836


>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
           protein.
          Length = 1415

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 KPVTTERSSMMTAAN*PGRPTAPGXLGPAG 370
           K VT+E SSM+T    PG P A G  GP G
Sbjct: 807 KIVTSEGSSMLTVPGPPGPPGAMGPPGPPG 836


>BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protein 1
           protein.
          Length = 1287

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 IGRTKKDIQLAVSFQSDTRVTSPGTNKWGEGRSSARWAK 259
           IG+ K +       QSD   T P +NKW +  + A+W +
Sbjct: 660 IGQGKYEPGFFPKLQSDVLSTGPASNKWTKRNAPAQWRR 698


>BC009354-1|AAH09354.2|  948|Homo sapiens RAB6IP1 protein protein.
          Length = 948

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 IGRTKKDIQLAVSFQSDTRVTSPGTNKWGEGRSSARWAK 259
           IG+ K +       QSD   T P +NKW +  + A+W +
Sbjct: 321 IGQGKYEPGFFPKLQSDVLSTGPASNKWTKRNAPAQWRR 359


>AK025499-1|BAB15155.1|  872|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21846 fis, clone HEP01887. ).
          Length = 872

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 IGRTKKDIQLAVSFQSDTRVTSPGTNKWGEGRSSARWAK 259
           IG+ K +       QSD   T P +NKW +  + A+W +
Sbjct: 245 IGQGKYEPGFFPKLQSDVLSTGPASNKWTKRNAPAQWRR 283


>AB209378-1|BAD92615.1|  317|Homo sapiens T-box 2 variant protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 203 TSPGTNKWGEGRSSARWAKMMM 268
           T  GT +WG GRSS RWA +++
Sbjct: 292 TGGGTGRWG-GRSSGRWAGLLL 312


>AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.
          Length = 1359

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 IGRTKKDIQLAVSFQSDTRVTSPGTNKWGEGRSSARWAK 259
           IG+ K +       QSD   T P +NKW +  + A+W +
Sbjct: 732 IGQGKYEPGFFPKLQSDVLSTGPASNKWTKRNAPAQWRR 770


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,416,483
Number of Sequences: 237096
Number of extensions: 2608747
Number of successful extensions: 8767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8670
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)