Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P09
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   113   4e-26
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.92 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   2.1  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   8.5  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  113 bits (271), Expect = 4e-26
 Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 1/178 (0%)
 Frame = +1

Query: 178 YHQPNRNMATLKAXSIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 357
           +H  +   ATLK    RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 358 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVXTGVSKVIRNRLGEPGA-ENXKVICVGDKSR 534
           + A    PE+  K L VA +SD+GLCG + + +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 535 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGXIIYXKFKSVVSY 708
             L R   +        IG   P+F +A Q+++ IL    ++    ++Y KF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSF 200


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +1

Query: 376 PPEDD-PKQLFVAMTSDR----GLCGAVXTGVSKVIRNRLGEPGAENXKVICVGDKSRGI 540
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA +  +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 541 LQRLYGKHIISVA 579
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 733 VEGASRTGRKRPQT*TCXK*XXRNQTRILR*EWQW 629
           V GAS+T   RP + +C      N+   L+ EW W
Sbjct: 43  VGGASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 465 HFGYTSXYSSAQTSVRGHSNKQLLGVIFRRXNLSPFI---ELYXTFTIGTSSF 316
           HF  +S  SS+  + R H  KQLL  IF     S  +    ++ + T+G+ SF
Sbjct: 53  HFLSSSENSSSVRNTRTHKFKQLLHYIFFSNRSSSVLGKQNVHNSQTLGSVSF 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,680
Number of Sequences: 5004
Number of extensions: 64508
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)