Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P09
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             169   3e-42
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                30   2.3  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  30   2.3  
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              29   5.2  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   29   6.9  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            28   9.1  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  169 bits (411), Expect = 3e-42
 Identities = 76/166 (45%), Positives = 117/166 (70%)
 Frame = +1

Query: 220 SIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQ 399
           S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK 
Sbjct: 63  SLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPKH 122

Query: 400 LFVAMTSDRGLCGAVXTGVSKVIRNRLGEPGAENXKVICVGDKSRGILQRLYGKHIISVA 579
           L V ++SDRGLCG + +G++K ++  +    + N  ++  GDK++ IL R  GK+++   
Sbjct: 123 LIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMSF 182

Query: 580 NEIGRLPPTFLDASQLATAILTSGYEFGSGXIIYXKFKSVVSYAQS 717
            ++G+ PP F +A+ LA  IL +G++F +G + Y  F+SVVS+  S
Sbjct: 183 MDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRAS 228


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
 Frame = -3

Query: 675 DXSGTKLVS*GENGSGQLTGVQESRWETSDLISNTN-DVLSV-QSLQDTARFISHTDHL- 505
           D    KL    +N +  +TG  + R  +SDL+ + N D L V + L     F    ++L 
Sbjct: 366 DRDINKLEQVQKNAARFVTGTYDPRASSSDLVKSLNWDSLEVRRQLAQLCLFYKIRNNLV 425

Query: 504 -XVLSTRFAETVADHFGYTSXYSSAQTSVRGHSNKQLLGVIFRRXNLSPFIELYXTFTIG 328
              L  +F   +      +S Y+  Q++V  HS       I R  NL P  E+  + +I 
Sbjct: 426 NIALPQQFQPNLRPSRTNSSKYNQIQSNVLSHSYSFFPRTI-RTWNLLP-SEVVESSSID 483

Query: 327 TSSFQVTLSTGVFSS*HHLHGLCDFLDIFHRFKTDGXGLQSSHIPVWL 184
           +   + T +  +F     L G C    +F     +G  + +S  PVW+
Sbjct: 484 SFKSK-TGNDWLFRQLPSLQGPCIAFWVFQEV-NEGFKMAAS-FPVWI 528


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 25/113 (22%), Positives = 45/113 (39%)
 Frame = +1

Query: 163 VVAVVYHQPNRNMATLKAXSIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEG 342
           V+ +   +P+ N A +      L SVK +Q   +S     A K   A + +       E 
Sbjct: 421 VLQIARVKPDLNQAHVDTGPPPLCSVKRVQSYCES-----APKLGSAPKPVSKCSEISEH 475

Query: 343 AVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVXTGVSKVIRNRLGEPGAEN 501
                     TP    PK+  +      G   ++  G  K++++RLG+ G ++
Sbjct: 476 DAMTSSTLVTTPVISAPKKHELTSQGTLGRVESIVEGEGKLLKSRLGDEGVKD 528


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = +1

Query: 391 PKQLFVAMTSDRG-LCGAVXTGVSKV------IRNRLGEPGAENXKVICVGDKSRGILQR 549
           P++LF+   S  G +  AV TG+S+V      +R    +      K   + D+ +G  + 
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506

Query: 550 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 654
               H+++V N +G +       +   T +L  GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 585 LISNTNDVLSVQSLQDTARFISHTDHLXVLSTRFAETVADHFGYTSXYSSAQTSVRGHSN 406
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 405 KQ 400
            Q
Sbjct: 121 SQ 122


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 279 HHLHGLCDFLDIFHRFKTDGXGLQSSHIPVWL 184
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,361,092
Number of Sequences: 59808
Number of extensions: 549487
Number of successful extensions: 1325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)