Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P09
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.9  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 LRTGCRHPSRGGGLPSAKQ 194
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 LRTGCRHPSRGGGLPSAKQ 194
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 566 MCFPYNLCRIPRDLSPTQITL 504
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 491  PGSPRRLRITLDTPVXTAPHKPLSEVIATNNCLGSSS 381
            P SP+  R+T++     A   P + +IATN  + S S
Sbjct: 1287 PSSPQP-RLTVNHAYRDAVTVPGNNLIATNTTVSSGS 1322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,797
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)