Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P08
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   8.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 659 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVXSRVTPRTSSGS 799
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNS 260


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 709 ITQYIEEEFVSQQADTIRXLAGHTSDLKRFITENTGXTCL 828
           I Q  +++FV   +   + L  +  + KR +TEN G T L
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNGFTTL 366


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 690 PPPRC*DHSIHRGGIRESASRYDSXPRGSHLGPQAVHNREH 812
           PP R  + ++ R G R SA  +    R    GPQ   + EH
Sbjct: 27  PPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRSLEH 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,561
Number of Sequences: 5004
Number of extensions: 39038
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)