Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_P08
(908 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 5e-08
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 6e-06
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18) 44 2e-04
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 30 2.2
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 3.0
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 30 3.0
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 29 3.9
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 29 6.9
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17) 28 9.1
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 55.6 bits (128), Expect = 5e-08
Identities = 36/119 (30%), Positives = 62/119 (52%)
Frame = +1
Query: 439 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAK 618
GF K F K S + E L+K +RGG++ + D E G + ++
Sbjct: 233 GFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQDIKKPEKD-------EWGCGMDSIQV 285
Query: 619 ALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
ALD +K + + + +H+ K+ D A++T +IE F+++Q + I+ LAGH ++LKR
Sbjct: 286 ALDLEKHVNQALLDLHKIAEKHGD----AQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340
Score = 48.0 bits (109), Expect = 1e-05
Identities = 29/119 (24%), Positives = 60/119 (50%)
Frame = +1
Query: 439 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAK 618
GFA F+K +++ + ++ + KRGG++ H +K + G+ + A+
Sbjct: 13 GFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRDHW-----GNGLMAMRD 65
Query: 619 ALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
AL +K++ + +H+ N D ++ ++E F+ +Q D+I+ LA + S L+R
Sbjct: 66 ALYLEKEINHALLDLHQVADTN----RDPQVQDFLESNFLGEQVDSIKTLANYVSTLQR 120
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 48.8 bits (111), Expect = 6e-06
Identities = 32/119 (26%), Positives = 59/119 (49%)
Frame = +1
Query: 439 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAK 618
GF K F K S + E L K +RGG++ + D + G A+
Sbjct: 165 GFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQDIKRPERD-------DWGCGQDAIQA 217
Query: 619 ALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
ALD +K + + + +H+ K+ D +++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 218 ALDLEKHVNQALLDLHKVAEKHGD----SQMQDWLESHYLTEQVEAIKELAGHLTNLKR 272
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 46.0 bits (104), Expect = 4e-05
Identities = 30/119 (25%), Positives = 59/119 (49%)
Frame = +1
Query: 439 GFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAK 618
GF K F + S + E L K +RGG++ + D G ++ +
Sbjct: 180 GFHKYFMEASHEEREHAEKLAKFQLQRGGRIVLQDIKRPERDDWGC-----GQDV--IQA 232
Query: 619 ALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
ALD +K + + + +H+ K+ D +++ ++E ++++Q + I+ LAGH ++LKR
Sbjct: 233 ALDLEKHVNQALHDLHKVAEKHGD----SQMQDWLESHYLTEQVEAIKELAGHMTNLKR 287
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 44.0 bits (99), Expect = 2e-04
Identities = 21/70 (30%), Positives = 43/70 (61%)
Frame = +1
Query: 586 EVGHEIGALAKALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRX 765
E G + A+ ALD +K + + + + + KN D A+++ +IE+ F+++Q ++IR
Sbjct: 70 EWGSGLEAMQTALDLEKHVNQALIELEKTAEKNGD----AQMSDFIEDHFLTEQVESIRE 125
Query: 766 LAGHTSDLKR 795
L+G+ + LK+
Sbjct: 126 LSGYIAVLKK 135
>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
Length = 88
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/75 (29%), Positives = 44/75 (58%)
Frame = +1
Query: 592 GHEIGALAKALDXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLA 771
G+ + A+ AL +K++ + +HR+ + +D A++ +IEE F+++Q D+I+ L+
Sbjct: 8 GNGLMAMEDALALEKEILSSLQALHRKAQEEND----AQMQDFIEETFLNEQMDSIKQLS 63
Query: 772 GHTSDLKRFITENTG 816
+ S L+R E G
Sbjct: 64 NYVSTLRRLGGEGLG 78
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 714 SDLSIVEEVAVFSDFPVDEENPLGKLLLRVQ 622
SDL +E FSDF ++E LGKL LR++
Sbjct: 137 SDLDDLETDFTFSDFSLEEFPELGKLALRIK 167
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 667 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRXLAGHTSDLKRFITENTG 816
+EVT N+ L D +TQ E EE+V + IR + T +KR+IT++ G
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 626 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS--*VSKPIRFVXSRVTPRTSSGS 799
+R++SL R +S SLKT+ + +S NTS + S SK + + +TSS +
Sbjct: 117 SRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRSPKTSSKSSPKTSPKTSLKTSSKT 176
Query: 800 *PRT 811
P+T
Sbjct: 177 SPKT 180
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 626 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVXSRVTPRTSSGS*P 805
++++SL +S SLK + ++ SL TSR+ K R + +P+TSS S P
Sbjct: 105 SQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTD--RKKSRNTSPKRSPKTSSKSSP 162
Query: 806 RT 811
+T
Sbjct: 163 KT 164
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 632 RSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 736
++SL +S SLKT+ ++M SL TSRR S
Sbjct: 154 KTSLKTSLKASLKTSLKTSLKTSMKTSLKTSRRTS 188
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 617 KPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 736
KP R+SS SSS+G S +++SST S +SR +S
Sbjct: 1005 KPARRQSSSSSSSSSSSGSSSYSSSSSTGSSSSGSSRSSS 1044
>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
Length = 237
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 469 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 564
+DS ++ +G +K V K GG+ F H K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191
>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 586 EVGHEIGALAKALDXQKQLAERIFFIHREVTKNSDLLHDAEIT 714
E+G ++ L+KAL +++LA +I + E T NS ++ E T
Sbjct: 458 ELGRQVQELSKALSLKQELANKI--MQNEGTMNSKMIKQYEDT 498
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,766
Number of Sequences: 59808
Number of extensions: 315125
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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