Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P08
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    40   0.002
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    37   0.017
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    34   0.12 

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 31/117 (26%), Positives = 54/117 (46%)
 Frame = +1

Query: 445 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAKAL 624
           AK F++ SD+  E    L++    RGG++        + D       E G  + A   AL
Sbjct: 48  AKFFKEQSDEEREHATELMRVQNLRGGRVVLQDIQKPEND-------EWGTALKAFEAAL 100

Query: 625 DXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
             +K   E +  +H     ++D    A +T +IEE+++ +Q  +I   A   ++LKR
Sbjct: 101 ALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINEFARMVANLKR 153


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 29/117 (24%), Positives = 55/117 (47%)
 Frame = +1

Query: 445 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSXYTVEVGHEIGALAKAL 624
           AK F++ SD+       L++    RGG++  +     K +K    TV     + A   AL
Sbjct: 48  AKFFKEQSDEERGHATELMRIQAVRGGRV--AMQNIQKPEKDEWGTV-----LEAFEAAL 100

Query: 625 DXQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKR 795
             ++     +  +H    + +D    A +T YI+E+++ +Q  +I   A H +++KR
Sbjct: 101 ALERANNASLLKLHGIAEQRND----AHLTNYIQEKYLEEQVHSINEFARHIANIKR 153


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 667 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLAGHTSDLKRF 798
           + V K  ++LH     Q  EE F +Q   TIR  A   +DLK+F
Sbjct: 41  KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKF 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,244
Number of Sequences: 27780
Number of extensions: 227407
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)