Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P05
         (1295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.11 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
 Frame = +3

Query: 978  PPXSXAXITXPXPLTESCXPQXXXXXXPXSPAPXXPXXPP-PXXXXXXLSSLXPPATTXX 1154
            PP + A    P P +E   P       P  P P     PP P       SSL PPA    
Sbjct: 124  PPSAPAP---PTPQSE-LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179

Query: 1155 SLSRPVAXSRGLXPXSXPPXPPXTXP 1232
             +  P   S    P + PP PP   P
Sbjct: 180  PVKSP--PSAPSLPSAVPPMPPKVPP 203


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 31/113 (27%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
 Frame = +3

Query: 927  PSRXXXXXPXPHSXPQXPPXSXAXITXPXPLTESCXPQXXXXXXPXSPAPXXPXXPPPXX 1106
            PS      P P   P  P  S A    P P   S  P          P P     PP   
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVA--APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202

Query: 1107 XXXXLSSLXPPATTXXSLSRPV-AXSRGLXPXSXPPXPPXTXPVXXS-GPLVS 1259
                +  + PP+T     + PV   S GL P   P       P   S  P VS
Sbjct: 1203 PSVGVPPVPPPST-----APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 23/98 (23%), Positives = 29/98 (29%)
 Frame = +3

Query: 927  PSRXXXXXPXPHSXPQXPPXSXAXITXPXPLTESCXPQXXXXXXPXSPAPXXPXXPPPXX 1106
            PS      P P   P  P  S A    P P   S  P          P P     PP   
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVP---SGAPPVPKPSVAAPPVPAPSGAPPVPK 1163

Query: 1107 XXXXLSSLXPPATTXXSLSRPVAXSRGLXPXSXPPXPP 1220
                   +  P++    + +P A    + P S  P  P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
 Frame = +3

Query: 963  SXPQXPPXSXAXITXPXPL-TESCXPQXXXXXXPXSPAPXXPXXPPPXXXXXXLSSLXPP 1139
            S P  PP   A  T   P+ T    P       P S  P  P   P        + + PP
Sbjct: 399  SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458

Query: 1140 ATTXXSLSRPVAXSRGLXPXSXPPXP 1217
                   + P+  +    P +  P P
Sbjct: 459  LPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = +3

Query: 1002 TXPXPLTESCXPQXXXXXXPXSPAPXXPXXPPPXXXXXXLSSLXPPATTXXSLSRPVAXS 1181
            T   P+  S          P   AP  P  PPP      +SS  PP +    ++ PV+ +
Sbjct: 227  TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP--SNGTVSS--PPNSPPRPIA-PVSMN 281

Query: 1182 RGLXPXSXPPXPPXTXPV 1235
              +   S PP PP +  V
Sbjct: 282  PAINSTSKPPLPPPSSRV 299



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/66 (25%), Positives = 22/66 (33%)
 Frame = +3

Query: 1059 PXSPAPXXPXXPPPXXXXXXLSSLXPPATTXXSLSRPVAXSRGLXPXSXPPXPPXTXPVX 1238
            P  P       PPP           PP ++  ++S P A    +   S P  PP      
Sbjct: 352  PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 1239 XSGPLV 1256
             S P V
Sbjct: 412  TSTPPV 417



 Score = 26.2 bits (55), Expect = 9.9
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +3

Query: 1065 SPAPXXPXXPPPXXXXXXLSSLXPPATTXXSLSRPVAXSRGLXPXSXPPXPPXTXP 1232
            S A   P  PPP        +L P      + + PV     L P S PP  P + P
Sbjct: 382  SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAP 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,456
Number of Sequences: 5004
Number of extensions: 12215
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)