Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P04
         (1105 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    33   0.34 
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.4  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    30   2.4  
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    29   5.5  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    28   9.6  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    28   9.6  

>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 796  PXXPXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
            P  P LP    P  P +A  P    P      PP  PP +PP
Sbjct: 1081 PPSPPLPPSSLPPPPPAALFPPLPPPPSQPPPPPLSPPPSPP 1122


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
 Frame = +1

Query: 688 PXXXXAXPXPLLXSXRPSXXXHATHPXXLXGXXXGXPXXPXLPXXPAPXGP--XSAXXPX 861
           P      P P L S  P     +T P          P     P  P P  P   S   P 
Sbjct: 396 PPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPP 455

Query: 862 AXLPXXXXSHPPXXPPXTPP 921
              P      PP  PP  PP
Sbjct: 456 PPPPPPPVYSPPPPPPPPPP 475



 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +3

Query: 627 PLPRTXAXPXLSPXKTXPKXPXXXXXXPXPSTXXRPPLXXXPRHPP 764
           P P +   P  SP    P  P      P P     PP+   P  PP
Sbjct: 426 PPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPP 471



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 796 PXXPXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
           P  P  P  P P        P    P    S PP  PP  PP
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPP 492


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 796 PXXPXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
           P  P  P  P P  P     P    P      PP  PP  PP
Sbjct: 381 PPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPP 422


>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 805 PXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
           P  P    P  P S   P    P    SHPP  PP  PP
Sbjct: 36  PIQPSSQPPTQPPSQ--PPTQPPTQPPSHPPTQPPTPPP 72


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 760 HPXXLXGXXXGXPXXPXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
           HP    G   G    P LP  P P  P  +  P +  P    S P   P  + P
Sbjct: 188 HPPPYGGYFSGSNGQPPLPVSPPP--PLPSSHPSSLFPVTTNSSPTIPPSSSYP 239


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 760 HPXXLXGXXXGXPXXPXLPXXPAPXGPXSAXXPXAXLPXXXXSHPPXXPPXTPP 921
           HP    G   G    P LP  P P  P  +  P +  P    S P   P  + P
Sbjct: 188 HPPPYGGYFSGSNGQPPLPVSPPP--PLPSSHPSSLFPVTTNSSPTIPPSSSYP 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,503,819
Number of Sequences: 28952
Number of extensions: 67888
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2763501360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)