Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    28   1.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   4.8  

>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
 Frame = -3

Query: 290 HIPPTIIDPSGQLPELRTYSTRPVELFPKNA------AVFEIIDDLEPAIKLRXXXTDTS 129
           HI  T++    QLP+   +   P+EL  + A       +  I+DD +   +L    T   
Sbjct: 31  HILGTLVGTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISYIVDDTKVHKQLLENTTKDD 90

Query: 128 NKHXIAKRNTLIGDMXFGAXHSKXXK 51
            K  + KR +L  D    A   +  K
Sbjct: 91  VKQCLKKRQSLAYDQMIAAKKKENEK 116


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 388 YILFVFVF*SE*CGNRLHIYVYETITNVLLLFIYFY 495
           ++ F FV  S   GNRL+IY   ++ ++L +   +Y
Sbjct: 535 FVPFAFVTFSITGGNRLYIYAASSVFSILCITALYY 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,628
Number of Sequences: 5004
Number of extensions: 47227
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)