Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P03
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 307 FSILGCTYLQP*LIPRGN 254
           F   GC + Q  LIP+GN
Sbjct: 576 FDFCGCGWPQHMLIPKGN 593


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 427 GNRLHIYVYETITNVLLLFIYFYIICW 507
           G    +   +TIT +L   +  + ICW
Sbjct: 247 GETKQVQSRKTITRMLSAVVITFFICW 273


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 479 FLFIFILYVGIVTNFICKPW*GNN*TYLFYLHLF 580
           F+ I +L  G V  F+CK     +  Y   L+LF
Sbjct: 12  FVIINVLLHGQVICFVCKDITSTSALYRLKLYLF 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,096
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)