Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P03
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At1g77910.1 68414.m09079 hypothetical protein contains similarit...    29   4.2  

>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 416 QNDVEIDYIFMYMKP*LMFCYFLFIFILYVGIVTNFICKPW*GNN*TYLFYLHLFKWTFK 595
           Q  V + + F YM   ++    + IF+ YV  VT+ +          Y FYL L +    
Sbjct: 168 QASVSLFFSFEYM---ILATTTVAIFVKYVFYVTDMLMDGQWEKKPVYTFYLELIRDLLH 224

Query: 596 VDINYCMIFVI 628
           + +  C  FVI
Sbjct: 225 LSMYICFFFVI 235


>At1g77910.1 68414.m09079 hypothetical protein contains similarity
           to NADH dehydrogenase subunit 1
          Length = 89

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 437 YIFMYMKP*LMFCYFLFIFILY 502
           YIF+YM P + F  FL  F++Y
Sbjct: 50  YIFIYMPPLIDFLIFLLCFVIY 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,246,110
Number of Sequences: 28952
Number of extensions: 230015
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)