Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P02
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    30   1.8  
At1g76010.1 68414.m08825 expressed protein                             28   7.4  
At1g72110.1 68414.m08335 expressed protein                             28   7.4  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.8  

>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -2

Query: 906 PGIPDLGXXXPX-WXGXRXPXRRPGQXXGAGXGRXPNXXPPXPGG 775
           P  P  G   P  W G R P  RPG   G G G       P PGG
Sbjct: 59  PRGPGFGPRGPGPWSGPRGP--RPGGGGGPGPGPWSGPRGPRPGG 101


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 177 DSGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDRPQG-RPYFKPTPFPGA 344
           D G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y  P   P  
Sbjct: 220 DGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYDGP---PQG 274

Query: 345 RGG 353
           RGG
Sbjct: 275 RGG 277


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 426 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 331
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 228 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 338
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,987
Number of Sequences: 28952
Number of extensions: 260319
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)