Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_P01
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.68 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   6.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.4  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   8.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTPS 676
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P TP+
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358

Query: 677 XP 682
            P
Sbjct: 359 VP 360



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTPS 676
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412

Query: 677 XP 682
            P
Sbjct: 413 VP 414



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTP 673
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    SS++  P TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249

Query: 674 SXP 682
           + P
Sbjct: 250 TVP 252



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 497 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPXTP 673
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +  T +ST   P TP
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPPTGNST--TPVTP 303

Query: 674 SXP 682
           + P
Sbjct: 304 TVP 306


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 579 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 478
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 409 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 588
           +  T K +N+++H+ L L     ++   FG S D +S ++    +   +N   YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201

Query: 589 EDXQYLK 609
           +   ++K
Sbjct: 202 DGFDFIK 208


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 519
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 134 NNTARTKANKGRRRXGAXXSFESKATNTQKYVRRPERXGRXXR 6
           N+T  +K  +GR   G+  ++ S   + ++Y  R  R  R  R
Sbjct: 14  NHTVSSKKRRGRPPKGSYAAYGSSDDDDEEYSGRTRRRNRNTR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,631
Number of Sequences: 5004
Number of extensions: 44987
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)