Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O24
(1069 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 40 8e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.28
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.84
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.6
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 4.5
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 39.5 bits (88), Expect = 8e-04
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Frame = +3
Query: 825 PXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXXPXPXPXTLXP-----AXLXAPT 989
P P P L P P + P PP P P P P +L P A + +P
Sbjct: 128 PAPPTPQSELRPPTSA-PPRPSIPPPSPASAPPIPSKAP-PIPSSLPPPAQPAAPVKSPP 185
Query: 990 SXPSXPPXXPXXPPXXPRPXPXVDAP 1067
S PS P P PP P P P AP
Sbjct: 186 SAPSLPSAVPPMPPKVP-PPPLSQAP 210
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +3
Query: 918 PPXPPXXPXPXPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRPXPXV 1058
PP P P P P AP PS PP P P P P +
Sbjct: 124 PPSAPAPPTPQSELRPPT--SAP-PRPSIPPPSPASAPPIPSKAPPI 167
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.017
Identities = 29/99 (29%), Positives = 33/99 (33%)
Frame = +3
Query: 771 PXLPPIPAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXXPXPX 950
P LPP+ + P P P L P P P A P + P PP P
Sbjct: 401 PALPPL----GNASRTSTPPVPTPPS-LPPSAPPSLPPSAP-PSLPMGAPAAPPLPPS-- 452
Query: 951 PXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRPXPXVDAP 1067
P P P+ PP P P P P P AP
Sbjct: 453 ----APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.9 bits (59), Expect = 2.6
Identities = 26/101 (25%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Frame = +3
Query: 777 LPPIPAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXP-----LXXLXXPPXPPXX- 938
LPP P P ++P P P P P + PP PP
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Query: 939 PXPXPXTLXPAXLXAPTSXP---SXPPXXPXXPPXXPRPXP 1052
P L P + TS P + P P PP P P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +1
Query: 835 PXLXGXSHPXSXPXPPAPPXXPSAXXXXPXXPXXXRXPXPXLSXPPXSXXPRPXPPP 1005
P + S S P PP PP +A P P P P PP S PP
Sbjct: 325 PPIGNGSSNSSLPPPP-PPPRSNAAGSIPLPPQGRSAPPP---PPPRSAPSTGRQPP 377
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.12
Identities = 27/102 (26%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Frame = +3
Query: 780 PPIPAX----PXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXX--P 941
PP+PA P P P P + P P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 942 XPXPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRPXPXVDAP 1067
P P T P PT PP P P P +AP
Sbjct: 1210 VPPPSTAPP----VPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Score = 31.5 bits (68), Expect = 0.21
Identities = 30/100 (30%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Frame = +3
Query: 789 PAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXP-PXXPXPXPX-TL 962
P+ P ++T P P P L P PL PP P P P P T
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAP---PVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 963 XPAXLXAPTSXPSXPPXXPXXP---PXXPRP--XPXVDAP 1067
P + + PS PP P P P P P V AP
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Score = 28.7 bits (61), Expect = 1.5
Identities = 25/94 (26%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Frame = +3
Query: 780 PPIPAX----PXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXXPX- 944
PP+PA P P P P + P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 945 PXPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRP 1046
P P P + AP+ P P PP P P
Sbjct: 1143 PKPSVAAPP-VPAPSGAPPVPKPSVAAPP-VPAP 1174
Score = 27.5 bits (58), Expect = 3.4
Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Frame = +3
Query: 771 PXLPPIPAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXXPXPX 950
P +P + + L + P P P + P+ P P PP P P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPV-PIPTSTPPVPKSSSGAPSAPPPVPAPS 1070
Query: 951 PXT-LXPAXLXAP-TSXPSX-PPXXPXXPPXXPRPXPXVDAP 1067
PA AP PS PP P P P V P
Sbjct: 1071 SEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Score = 27.5 bits (58), Expect = 3.4
Identities = 26/100 (26%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Frame = +3
Query: 780 PPIP----AXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPPXXPXP 947
PP+P A P + P P P P P P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 948 XPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRPXPXVDAP 1067
P PA P PS P P P P AP
Sbjct: 1181 VP---KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 26.2 bits (55), Expect = 7.9
Identities = 26/104 (25%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Frame = +3
Query: 771 PXLP-PIPAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXXLXXPPXPP---XX 938
P +P P A P + P P P P P+ P + PP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP--VPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 939 PXPXPXTLXPAXLXAPTSXPSXPPXXPXXPP-XXPRPXPXVDAP 1067
P P P P + P P PP P P V P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.28
Identities = 23/100 (23%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Frame = +3
Query: 771 PXLPPIPAXPXXXXLATLPXXPXPXRXLXPXLXPLXPCXAXXPLXX----LXXPPXPPXX 938
P +P +P P + P P P P P P+ + PP P
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVV 673
Query: 939 PXPXPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRPXPXV 1058
P PA P + P P PP P V
Sbjct: 674 PEVPSVPQPPAVPVVPEAGQLNEPVVPPLPPHDETQEPQV 713
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.84
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Frame = +3
Query: 918 PPXPPXX----PXPXPXTLXPAX--LXAPTSXPSXPPXXPXXPPXXPRPXPXVDA 1064
PP PP P P P + P + P P P PP P P P V A
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +3
Query: 897 PLXXLXXPPXPPXXPXPXPXTLXPAXLXAPTSXP---SXPPXXPXXPPXXPRPXPXVDAP 1067
P + PP P P P P P S P S PP P P P P AP
Sbjct: 1683 PAHPVSTPPVRPQSAAP-PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 945 PXPXTLXPAXLXAPTSXPSXPPXXPXXPPXXPRP 1046
P P +L P L +PT S P PP P P
Sbjct: 576 PSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGP 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,075
Number of Sequences: 5004
Number of extensions: 25217
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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