Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O22
         (1005 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
 Frame = +3

Query: 396 PNEPPNGXSXXSLPSPPTXXTXFDVFXXXACSDXRXXXRTPCSXXXS--TCGRAXTXPPX 569
           P  PP   S  S+P PPT  +  D       S       T C+   S  T G +    P 
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTD-----TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI 247

Query: 570 VPVXPP 587
            P  PP
Sbjct: 248 TPTVPP 253



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/64 (28%), Positives = 22/64 (34%)
 Frame = +3

Query: 396 PNEPPNGXSXXSLPSPPTXXTXFDVFXXXACSDXRXXXRTPCSXXXSTCGRAXTXPPXVP 575
           P  PP   S  S+P PPT  +  D       S       T C+   S      +  P  P
Sbjct: 249 PTVPPTSTSSTSIPIPPTSTSSTD-----TNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP 303

Query: 576 VXPP 587
             PP
Sbjct: 304 TVPP 307



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
 Frame = +3

Query: 396 PNEPPNGXSXXSLPSPPTXXTXFDVFXXXACSDXRXXXRTPCSXXXS---TCGRAXTXPP 566
           P  PP   S  S+P PPT  +  D       S+      T C+   S   T G +    P
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTD-----TNSNPLPTTSTSCTTSTSIPPTGGSSSLSTP 190

Query: 567 XVPVXPP 587
             P  PP
Sbjct: 191 ITPTVPP 197



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/69 (26%), Positives = 21/69 (30%)
 Frame = +3

Query: 396 PNEPPNGXSXXSLPSPPTXXTXFDVFXXXACSDXRXXXRTPCSXXXSTCGRAXTXPPXVP 575
           P  PP   S  S P PP   +          S       T C+   S      +  P  P
Sbjct: 357 PTVPPTSTSSTSTPPPPASTS-----STGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTP 411

Query: 576 VXPPAXSLT 602
             PP  S T
Sbjct: 412 TVPPTSSST 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,623
Number of Sequences: 5004
Number of extensions: 20651
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)