Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O20
         (962 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 106 PPPPPPP 126
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 817 RXGXPPPHXQGXXXGXPPXGGXP 749
           R G PP H  G   G  P  G P
Sbjct: 57  RQGIPPHHYGGPPSGGQPPQGMP 79



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -3

Query: 885 PPXXXPPXXXSXGGPPXFXXXPPXXGPPP 799
           P    P      G PP     PP  G PP
Sbjct: 47  PGSCDPSVGLRQGIPPHHYGGPPSGGQPP 75


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -1

Query: 641 KTPPPPXPXXXPXXPPPXPXP 579
           K PPPP P   P   P    P
Sbjct: 734 KLPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -1

Query: 641 KTPPPPXPXXXPXXPPPXPXP 579
           K PPPP P   P   P    P
Sbjct: 626 KLPPPPHPHHQPPRNPVGTNP 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.156    0.544 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,283
Number of Sequences: 336
Number of extensions: 2713
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)