Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O20
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
 Frame = -3

Query: 885 PPXXXPPXXXSXGGPPXFXXXPPXXGPP--PPXXRXXXXGXPPGGG 754
           P     P     G PP     PP  GPP  PP          P  G
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 854 PXXXPPFSPXXXPXGXPPPPXXGXXXGEXP 765
           P   P  SP     G PP P  G   G  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 905 PPPPXXXPHXXPPPGXXPXXXP 840
           PP P   P    PPG  P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = -1

Query: 662 PXPPPX*KTPPPPXPXXXPXXPPPXPXPXXPP 567
           P P P     P       P  P   P P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = -1

Query: 662 PXPPPX*KTPPPPXPXXXPXXPPPXPXPXXPP 567
           P P    + P    P      PPP   P  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 106  PPPPPPP 126
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 106  PPPPPPP 126
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 400 PPKXPPXPPP 371
           PPK  P PPP
Sbjct: 338 PPKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 100  SXPPPPPPP 126
            S  PPPPPP
Sbjct: 1856 SPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.156    0.544 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,623
Number of Sequences: 438
Number of extensions: 7862
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)