Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O19
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   10.0 
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   10.0 

>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 351 LEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQXNVLIRLLHSYYPALRH 530
           +E ++F+   RE+   L K ++YA       +   +    MN   V++R      PALR 
Sbjct: 634 IEIAVFWVNEREDIAQLSKWYHYA-------RILAFIDPVMNPLIVILRT-----PALR- 680

Query: 531 RQLRSTW 551
           RQLRS W
Sbjct: 681 RQLRSQW 687


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 431 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 294
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 351 LEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQXNVLIRLLHSYYPALRH 530
           +E ++F+   RE+   L K ++YA       +   +    MN   V++R      PALR 
Sbjct: 634 IEIAVFWVNEREDIAQLSKWYHYA-------RILAFIDPVMNPLIVILRT-----PALR- 680

Query: 531 RQLRSTW 551
           RQLRS W
Sbjct: 681 RQLRSQW 687


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 431 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 294
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 399 LFKLFYYAKDFECFYKTACYARVYMNQXNVLI-RLLH-SYYPALR 527
           L  +  Y K FECF+K +   R+ + +  +L+ ++LH S+Y   R
Sbjct: 200 LLTITEYIKTFECFHKISSNDRLVLTRHIILMCKILHESHYAVSR 244


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 669  SKXTNNS*CTPTIQXPDLPQHEDRIAYLTEDVGLNAYY 782
            S  +NN  C P+       +H DR  Y +E  GL AYY
Sbjct: 1473 SSTSNNHICCPS-------RHSDRPGYQSESFGLGAYY 1503


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 345 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 479
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 345 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 479
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,123,088
Number of Sequences: 27780
Number of extensions: 278909
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)