Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O17
         (905 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4PMN9 Cluster: Salivary selenoprotein M; n=1; Ixodes s...    47   6e-04
UniRef50_UPI0000D56FD2 Cluster: PREDICTED: similar to Selenoprot...    47   8e-04
UniRef50_UPI00015B4977 Cluster: PREDICTED: similar to selenoprot...    46   0.001
UniRef50_Q4A3I8 Cluster: Selenoprotein M; n=1; Suberites domuncu...    44   0.004
UniRef50_A5J2A1 Cluster: Selenoprotein M; n=1; Litopenaeus vanna...    43   0.012
UniRef50_Q8WWX9 Cluster: Thioredoxin-like selenoprotein M precur...    41   0.050

>UniRef50_Q4PMN9 Cluster: Salivary selenoprotein M; n=1; Ixodes
           scapularis|Rep: Salivary selenoprotein M - Ixodes
           scapularis (Black-legged tick) (Deer tick)
          Length = 129

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 145 VXFCAVFVLSSECXLSDXV--SARIEXCRGCSLNRLPEVKRFVMXXAPNYDRVE 300
           V  CA FV + E   +D V   AR+E C GC LN  PEVK+FV    P +  VE
Sbjct: 9   VLLCASFVSADEKEPADKVIVKARVESCGGCRLNAYPEVKKFVYDDIPLFHNVE 62


>UniRef50_UPI0000D56FD2 Cluster: PREDICTED: similar to Selenoprotein
           M precursor (Protein SelM); n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to Selenoprotein M
           precursor (Protein SelM) - Tribolium castaneum
          Length = 112

 Score = 46.8 bits (106), Expect = 8e-04
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 133 LLSVVXFCAVFVLSSECXLSDXVS-ARIEXCRGCSLNRLPEVKRFVMXXAPNYDRVE 300
           L+S V F A+   S+E      ++ AR+E C  C LNRLPEVK F+    P YD  E
Sbjct: 8   LVSCVAFLAL--ASAEAANDSKIARARVESCPSCKLNRLPEVKAFIYEDLPKYDNTE 62


>UniRef50_UPI00015B4977 Cluster: PREDICTED: similar to selenoprotein
           M; n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           selenoprotein M - Nasonia vitripennis
          Length = 117

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +1

Query: 205 ARIEXCRGCSLNRLPEVKRFVMXXAPNYDRVE 300
           A +E CRGC LNRLP+VK F++   P YD  E
Sbjct: 33  AVVESCRGCQLNRLPDVKAFILEDVPLYDNAE 64


>UniRef50_Q4A3I8 Cluster: Selenoprotein M; n=1; Suberites
           domuncula|Rep: Selenoprotein M - Suberites domuncula
           (Sponge)
          Length = 123

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 136 LSVVXFCAVFVLSSECXLSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNYDRVEVXF 309
           + V        +S    + +   AR+E C GC LN LP+VKRF+    P+Y  +E+ +
Sbjct: 1   MKVAVLFLTLCVSLAIGVGEIKKARLESCSGCRLNSLPKVKRFINDHLPDYPDLEIKY 58


>UniRef50_A5J2A1 Cluster: Selenoprotein M; n=1; Litopenaeus
           vannamei|Rep: Selenoprotein M - Penaeus vannamei
           (Penoeid shrimp) (European white shrimp)
          Length = 131

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 163 FVLSSECXLSDXVSARIEXCRGCSLNRLPEVKRFVMXXAP 282
           + L+ E   +    AR+E C GC LNRLPEVK+F+    P
Sbjct: 18  YTLAEELRETAIAKARVESCGGCRLNRLPEVKKFIHEDIP 57


>UniRef50_Q8WWX9 Cluster: Thioredoxin-like selenoprotein M
           precursor; n=15; Euteleostomi|Rep: Thioredoxin-like
           selenoprotein M precursor - Homo sapiens (Human)
          Length = 145

 Score = 40.7 bits (91), Expect = 0.050
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = +1

Query: 187 LSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNY 288
           LS    AR+E C GC LNRL EVK FV    P Y
Sbjct: 34  LSGLTRARVETCGGCQLNRLKEVKAFVTQDIPFY 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,051,980
Number of Sequences: 1657284
Number of extensions: 3506666
Number of successful extensions: 2682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)