Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O17
         (905 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068004-1|AAH68004.1|  145|Homo sapiens selenoprotein M protein.      37   0.12 
BC030236-1|AAH30236.1|  145|Homo sapiens selenoprotein M protein.      37   0.12 
BC013421-1|AAH13421.1|  145|Homo sapiens selenoprotein M protein.      37   0.12 
AY043487-1|AAK95397.1|  145|Homo sapiens selenoprotein SelM prot...    37   0.12 

>BC068004-1|AAH68004.1|  145|Homo sapiens selenoprotein M protein.
          Length = 145

 Score = 36.7 bits (81), Expect = 0.12
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 LSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNY 288
           LS    AR+E C G  LNRL EVK FV    P Y
Sbjct: 34  LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFY 67


>BC030236-1|AAH30236.1|  145|Homo sapiens selenoprotein M protein.
          Length = 145

 Score = 36.7 bits (81), Expect = 0.12
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 LSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNY 288
           LS    AR+E C G  LNRL EVK FV    P Y
Sbjct: 34  LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFY 67


>BC013421-1|AAH13421.1|  145|Homo sapiens selenoprotein M protein.
          Length = 145

 Score = 36.7 bits (81), Expect = 0.12
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 LSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNY 288
           LS    AR+E C G  LNRL EVK FV    P Y
Sbjct: 34  LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFY 67


>AY043487-1|AAK95397.1|  145|Homo sapiens selenoprotein SelM
           protein.
          Length = 145

 Score = 36.7 bits (81), Expect = 0.12
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 LSDXVSARIEXCRGCSLNRLPEVKRFVMXXAPNY 288
           LS    AR+E C G  LNRL EVK FV    P Y
Sbjct: 34  LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFY 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,145,154
Number of Sequences: 237096
Number of extensions: 591818
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)