Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O16
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = +3

Query: 483 DRPIR*NPVLGR-RLRGHLEGYGAARQRGSGQEHRSLQLQLEAAGEVAAARDCQAGRQSG 659
           ++P   +   GR R R HL  +      G  +  R+    + AAG+ AAAR       +G
Sbjct: 244 EKPFECDKCRGRFRRRHHLVHHKCG---GEEEAERAPAPAVRAAGDAAAARGAARADGAG 300

Query: 660 GMSSLPQPETPQGVL*GSRREDHGVLSPRLAG 755
           G     +P   Q      +R    V  P+LAG
Sbjct: 301 GPLHDHRPALAQ------QRRVAAVQVPQLAG 326


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 758 LSGEPRGEYXVIFTPRASQ 702
           L GE RG++ V  TP  S+
Sbjct: 212 LEGERRGKFTVPLTPVVSE 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,984
Number of Sequences: 336
Number of extensions: 3232
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)