Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O16
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = +3

Query: 411 ERSVLGSVPDTLAPGLQGRRLSLPDRPIR*NPVLGRRLRGHLEGYGAARQRGSGQEHRSL 590
           ++S+LGS+  +L+   + RR    D  +  N      +    E   +     SG E  S 
Sbjct: 7   DQSLLGSIARSLSLDRRARR-GAADLSLAGNATKVNTVH---EEESSLNDLFSGPEESSG 62

Query: 591 QLQLEAAGEVAAARDCQAGRQSGGMSSLPQPETP 692
            ++L    + AAA    +    GG SS P P +P
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 533 PGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 643
           P   W  +S      A +SP  + SS    CS  ++S
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVAS 506


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 263 VSVNIGTVDVSXANVNGXLDCXRHXAWLR 177
           V VN G   V   NVN      +   WLR
Sbjct: 52  VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,197
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)