Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O15
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   4.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   4.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   4.2  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 296 KWKSNDRVKN*RNVRK 343
           KWK ++++ N +NVR+
Sbjct: 287 KWKKDNKLPNTKNVRR 302


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 143 FKFIISNVLRINLHNVDTVDKYSRDF 66
           FK + SNV R+N    D +D + R+F
Sbjct: 606 FKELTSNVFRMNQFVYDAID-FLREF 630


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 296 KWKSNDRVKN*RNVRK 343
           KWK ++++ N +NVR+
Sbjct: 287 KWKKDNKLPNTKNVRR 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,186
Number of Sequences: 336
Number of extensions: 2448
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)