Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.66 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   2.0  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   8.1  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 259  VLVYRTEKYQKLKVEVERQSKKLEKRKE 342
            +L    EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 131 ISNVLRI---NLHNVDTVDKYSRDFLLDEVQNLKEF 33
           +SN+L++   N HN+ T  K+  +  LDE  NLK F
Sbjct: 427 LSNILKVDFQNGHNICTFAKWCINNNLDEPSNLKHF 462


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 82  LSTVSTLCRFILKTFEIINLNSF*V-YLSLD*RFCKMWSD 198
           +ST++ L +    + E +NL    + Y+ L  RFCK WSD
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,790
Number of Sequences: 5004
Number of extensions: 42501
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)