Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O15
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12030.1 68416.m01492 expressed protein similar to membrane p...    88   8e-18
At5g06660.1 68418.m00752 expressed protein contains PF05809: Euk...    87   2e-17
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ...    30   2.3  
At1g53200.1 68414.m06030 expressed protein                             29   3.1  
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    29   4.1  
At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12 [...    29   5.4  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    29   5.4  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    28   7.1  
At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12 [...    28   9.4  

>At3g12030.1 68416.m01492 expressed protein similar to membrane
           protein GB:BAA86974 GI:6467175 from [Homo sapiens]
          Length = 196

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = +1

Query: 190 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGD---SL 360
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ +KKLE  K  +     S+
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSI 72

Query: 361 DXXXXXXXXXXXXXXXXXXXDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAXLPFYP 540
                               DLSL K KS   +      +  + NS+F+G+VVA LPF+P
Sbjct: 73  KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 541 ISWIQGLS 564
           I+ ++ +S
Sbjct: 133 ITIVKKMS 140



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/72 (48%), Positives = 43/72 (59%)
 Frame = +2

Query: 521 LXFHFILFHGFKV*AHRNLPGDDYTDCSFIFLYILCTMSXXXNIXKLLGFAPSRAASKXG 700
           L FH I     K  +HR L GDD TDCS  FLY+LC++S   N+ K LGF+P R A+  G
Sbjct: 128 LPFHPITI--VKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAG 185

Query: 701 GALFAAPXTHSN 736
           G LF  P   +N
Sbjct: 186 G-LFPMPDPKTN 196


>At5g06660.1 68418.m00752 expressed protein contains PF05809:
           Eukaryotic protein of unknown function (DUF841)
          Length = 196

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
 Frame = +1

Query: 190 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSL--- 360
           ++DSL +V IS CTA + E ++W+L+YRT  Y+ LK  +++ SKKLE  K  +  S    
Sbjct: 13  YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSKLTN 72

Query: 361 DXXXXXXXXXXXXXXXXXXXDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAXLPFYP 540
                               DLSL K KS   +      +  + NS+F+G+VVA LPF+P
Sbjct: 73  KKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132

Query: 541 ISWIQGLS 564
           I+ ++ +S
Sbjct: 133 ITIVRKMS 140



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +2

Query: 563 AHRNLPGDDYTDCSFIFLYILCTMSXXXNIXKLLGFAPSRAASKXGGALFAAPXTHSN 736
           +HR L GDD TDCS  FLY+LC++S   N+ K LGF+P R A+  GG LF  P   +N
Sbjct: 140 SHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGG-LFPMPDPKTN 196


>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 334

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 120 NIRNNKFKFILS-VSFIRLTILQNVERFSLNSFHLYLHCVLRRRLNMGLS 266
           +I N K++++ S + ++R     N      ++FHL LH +  RRLN+ L+
Sbjct: 285 SISNEKYEWLKSNLRYVRRHFELNDPPQRFDAFHLTLHSIWLRRLNLKLT 334


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 RTEKYQKLKVEVERQSKKLEKRK 339
           +T+K +K+KVE E ++ KLEK K
Sbjct: 7   KTDKLEKIKVETEEKTDKLEKIK 29


>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 286 QKLKVEVERQSKKLEKRKEAHGDSLD 363
           QK+  E ERQ++K+E   E  GD++D
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAID 149


>At1g14870.1 68414.m01778 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 152

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 542 FHGFKV*AHRNLPGDDYTDCSFIFLYILCTMSXXXNIXKLLGF 670
           F+  K+ A  N+ GDD TDC   F   LC+++      K  G+
Sbjct: 78  FYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGY 120


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 271 RTEKYQKLKVEVERQSKKLEKRKEAHGDSLD 363
           + E+ ++ KVE++   +KLEKR +A     D
Sbjct: 407 KIEELERQKVEIDHSEEKLEKRNQAMNKKFD 437


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 246 RLNMGLSLQNGEISKTESGSRTTE*KIRET*GSSW 350
           R N   ++QN + S +ESG    E +  ET G SW
Sbjct: 56  RPNQDQNVQNHKQSHSESGKEVVEERPEETTGDSW 90


>At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 151

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 533 FILFHGFKV*AHRNLPGDDYTDCSFIFLYILCTMSXXXNIXKLLGF 670
           +  F+  K+ A  N+ GD  TDC   F   LC ++      K  GF
Sbjct: 74  YACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGF 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,855
Number of Sequences: 28952
Number of extensions: 211714
Number of successful extensions: 519
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)