Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O14
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    28   8.0  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   8.0  

>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 299 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLAC 168
           +D +T  C +C  KTT F Y       C  + +R      VL C
Sbjct: 1   MDCITRSCKVCNEKTTGFNYGVQSCNACKMFFRRALDTPKVLKC 44


>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
 Frame = -2

Query: 224 YNCTHY--SKRYYAIDSVLACLTFFFH-----RIYSFSKGQSEHFCD*LIC*KQLFFKFY 66
           YN   Y  +K  Y + +   CLT +FH     +IY+++ G  + F D L    QL F  Y
Sbjct: 154 YNIPKYPDTKYIYCVRNPKDCLTSYFHHNRNFKIYNWANGTWDVFLD-LFASGQLAFGDY 212

Query: 65  -------LYCIRESKILRIPYSE 18
                  L C+++  +L + Y +
Sbjct: 213 FEHLLSWLPCLKDDNVLFLKYED 235


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/53 (20%), Positives = 22/53 (41%)
 Frame = -2

Query: 320 RNSFLWNIDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 162
           ++ F +     +  C IC  + T F ++      C  + +R  A+     C+T
Sbjct: 16  KSKFRFPASSSSTRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 68


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 281 HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSK 129
           H +IC+ +     Y   DS NC  ++++  A++ V  C+  FF+ +  F K
Sbjct: 60  HVSICVDRIETNYYYDDDSSNC--FNRKQKAVEGV-DCMNAFFNDLKLFLK 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,508
Number of Sequences: 27780
Number of extensions: 215797
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)