Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O13
(908 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 2.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 3.0
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 34.7 bits (76), Expect = 0.10
Identities = 23/81 (28%), Positives = 25/81 (30%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P P P P P P+ P AP P P P P + P
Sbjct: 139 PYPPSP-NAPYPPPPNPPYPPPLYPPP---PNPPPPNAPYPPPPYPPPPNPPYPPPPNPP 194
Query: 840 XXXXXXXXXXXXXXPPXPXPP 902
PP P PP
Sbjct: 195 YPPPPNAPNPPPPNPPYPPPP 215
Score = 32.7 bits (71), Expect = 0.42
Identities = 21/83 (25%), Positives = 23/83 (27%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P P P P P+ AP P P P P + P
Sbjct: 109 PPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPP 168
Query: 840 XXXXXXXXXXXXXXPPXPXPPXP 908
P P PP P
Sbjct: 169 PPNAPYPPPPYPPPPNPPYPPPP 191
Score = 32.3 bits (70), Expect = 0.56
Identities = 23/83 (27%), Positives = 24/83 (28%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P P P P P P+ P AP P P P P P
Sbjct: 90 PNPPYP---PPPYPPYPPPPPYPPPPNP--PYPPPPNAPYPPPPNPPYPPPPNAPYPPSP 144
Query: 840 XXXXXXXXXXXXXXPPXPXPPXP 908
P P PP P
Sbjct: 145 NAPYPPPPNPPYPPPLYPPPPNP 167
Score = 32.3 bits (70), Expect = 0.56
Identities = 21/83 (25%), Positives = 24/83 (28%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P P P P P++ P P P P P + P
Sbjct: 115 PYPPPP-NAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAP 173
Query: 840 XXXXXXXXXXXXXXPPXPXPPXP 908
PP P PP P
Sbjct: 174 YPPPPYPPPPNPPYPPPPNPPYP 196
Score = 31.9 bits (69), Expect = 0.74
Identities = 23/83 (27%), Positives = 24/83 (28%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P P P P P P+ P AP P P P P
Sbjct: 104 PPPPYP-PPPNPPYPPPPNAPYPPPPN--PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPL 160
Query: 840 XXXXXXXXXXXXXXPPXPXPPXP 908
PP P PP P
Sbjct: 161 YPPPPNPPPPNAPYPPPPYPPPP 183
Score = 31.9 bits (69), Expect = 0.74
Identities = 31/127 (24%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Frame = +3
Query: 537 PEXXXXPVAEPXEXTPTNVS-P*RXXVPHRXXXXXXLTSGLXPXPPXPMRXPXXVXPTPX 713
P P P P N P P+ L P PP P P P
Sbjct: 120 PNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPY 179
Query: 714 XRPXXXPXXX--FXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLPXXXXXXXXXXXXXXPP 887
P P P+ P AP P P P P P PP
Sbjct: 180 PPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYP-------PPPNAPNPP 232
Query: 888 XPXPPXP 908
P PP P
Sbjct: 233 YPPPPNP 239
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/83 (27%), Positives = 25/83 (30%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
P PP P P PTP P P P + P P P P P H+P
Sbjct: 177 PKPPAPSTIP--TPPTPPAPPS--PPIPTAPPTPPM--PETPLPPGSPHIPPAPLHPHIP 230
Query: 840 XXXXXXXXXXXXXXPPXPXPPXP 908
PP P P P
Sbjct: 231 PAPPNPSKAIATPNPPMPETPLP 253
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Frame = +3
Query: 642 LTSGLXPXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPL---XPXPXXXXXCP 812
++S P PP P P P P P P + P PL P P P
Sbjct: 46 ISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQP 105
Query: 813 XXLPXSHLP 839
P LP
Sbjct: 106 PPAPPHFLP 114
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXP 791
P PP P P P P P P P P AP P P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +3
Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXP 791
P PP P + P P P P P P + P P P P
Sbjct: 387 PSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/89 (26%), Positives = 28/89 (31%)
Frame = +3
Query: 642 LTSGLXPXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXL 821
+++G+ PP P P P P P P P PQ P P P P
Sbjct: 357 ISAGINMSPPPPPPPP----PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Query: 822 PXSHLPXXXXXXXXXXXXXXPPXPXPPXP 908
P P PP P PP P
Sbjct: 413 PPPPPPAPPPP---------PPPPPPPPP 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,032
Number of Sequences: 59808
Number of extensions: 205349
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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