Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O13
         (908 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK123203-1|BAC85556.1|  178|Homo sapiens protein ( Homo sapiens ...    32   3.3  
AF068706-1|AAC67390.1|  751|Homo sapiens gamma2-adaptin protein.       31   7.6  

>AK123203-1|BAC85556.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41209 fis, clone BRALZ2012848. ).
          Length = 178

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 72  LHENDRLSVVRTAGWRSRPRHSTTMARHIGRITITTPSVLTFGXACWXXIRFGP--TFPT 245
           ++ N  +S  ++A W      ++TMARH G + + +P  +  G      ++ GP  + P 
Sbjct: 50  MYGNTWMSRQKSAAWEEPTCRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPL 109

Query: 246 KC 251
           KC
Sbjct: 110 KC 111


>AF068706-1|AAC67390.1|  751|Homo sapiens gamma2-adaptin protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 89  P*CCADCWLAVSAAPQYYHGSSH-WPYHH 172
           P CCA    A +A PQ+ H SS  WP +H
Sbjct: 715 PGCCAQESPAAAAGPQWEHSSSSGWPSYH 743


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,284,154
Number of Sequences: 237096
Number of extensions: 1190776
Number of successful extensions: 3224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3123
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11770329464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)