Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O13
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.6  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    29   4.6  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/80 (26%), Positives = 23/80 (28%)
 Frame = +3

Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
           P PP     P  + PTP   P   P     P S     P  P P      P  +P    P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPP-----PPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319

Query: 840 XXXXXXXXXXXXXXPPXPXP 899
                         PP P P
Sbjct: 320 PPPSRFGPPGMGGMPPPPPP 339



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/88 (25%), Positives = 26/88 (29%)
 Frame = +3

Query: 645 TSGLXPXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLP 824
           +SG+ P PP P   P    P P   P   P         P    + P P      P  +P
Sbjct: 292 SSGMWPPPPPP---PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348

Query: 825 XSHLPXXXXXXXXXXXXXXPPXPXPPXP 908
               P              PP   PP P
Sbjct: 349 PP--PPPRYPSAGPGMYPPPPPSRPPAP 374


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/80 (26%), Positives = 23/80 (28%)
 Frame = +3

Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLPXSHLP 839
           P PP     P  + PTP   P   P     P S     P  P P      P  +P    P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPP-----PPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329

Query: 840 XXXXXXXXXXXXXXPPXPXP 899
                         PP P P
Sbjct: 330 PPPSRFGPPGMGGMPPPPPP 349



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/88 (25%), Positives = 26/88 (29%)
 Frame = +3

Query: 645 TSGLXPXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQXAPLXPXPXXXXXCPXXLP 824
           +SG+ P PP P   P    P P   P   P         P    + P P      P  +P
Sbjct: 302 SSGMWPPPPPP---PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358

Query: 825 XSHLPXXXXXXXXXXXXXXPPXPXPPXP 908
               P              PP   PP P
Sbjct: 359 PP--PPPRYPSAGPGMYPPPPPSRPPAP 384


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 660 PXPPXPMRXPXXVXPTPXXRPXXXPXXXFXPHSXPQ 767
           P PP P R P    PTP   P   P     P + P+
Sbjct: 546 PTPPPPPREPTPREPTPEPEPVREPTPPPPPPAKPR 581


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,857,095
Number of Sequences: 27780
Number of extensions: 156340
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)