Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O12
         (1290 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    30   2.9  

>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 395 DPISXSTSHILACFXHXKIGNWQPLAAM 312
           DP + ST+H+L C  H   GNW+  A +
Sbjct: 672 DPFN-STAHVLLCSMHASSGNWENAALL 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,641
Number of Sequences: 28952
Number of extensions: 113885
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3344970224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)