Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O11
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     55   9e-08
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     55   9e-08
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    53   4e-07

>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 30/69 (43%), Positives = 35/69 (50%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MP+ I     FL+ A    A SV      + V F VRCS +LYTL   D   A  LK  L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 275 PPGLXVKXV 301
           PPGL V+ V
Sbjct: 61  PPGLTVQEV 69


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 30/69 (43%), Positives = 35/69 (50%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MP+ I     FL+ A    A SV      + V F VRCS +LYTL   D   A  LK  L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 275 PPGLXVKXV 301
           PPGL V+ V
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 29/68 (42%), Positives = 34/68 (50%)
 Frame = +2

Query: 98  PRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXLP 277
           P+ I     FL+ A    A SV      + V F VRCS +LYTL   D   A  LK  LP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 278 PGLXVKXV 301
           PGL V+ V
Sbjct: 92  PGLTVQEV 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,323
Number of Sequences: 37544
Number of extensions: 90602
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)