Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O11
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.      60   8e-09
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...    60   8e-09
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    46   1e-04

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score = 60.5 bits (140), Expect = 8e-09
 Identities = 33/67 (49%), Positives = 36/67 (53%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MPR I     FL+ A    A SV      + V F VRCS +LYTLV  D   AE LK  L
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 275 PPGLXVK 295
           PPGL VK
Sbjct: 61  PPGLAVK 67


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score = 60.5 bits (140), Expect = 8e-09
 Identities = 33/67 (49%), Positives = 36/67 (53%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MPR I     FL+ A    A SV      + V F VRCS +LYTLV  D   AE LK  L
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 275 PPGLXVK 295
           PPGL VK
Sbjct: 61  PPGLAVK 67


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 22/34 (64%), Positives = 23/34 (67%)
 Frame = +2

Query: 194 FXVRCSXFLYTLVXXDXXXAEXLKXXLPPGLXVK 295
           F VRCS +LYTLV  D   AE LK  LPPGL VK
Sbjct: 1   FKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVK 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,647,744
Number of Sequences: 237096
Number of extensions: 529980
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)