Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O11
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ...    54   1e-07
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)            54   1e-07

>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
           RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
           EMBL:X69979
          Length = 69

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/67 (43%), Positives = 35/67 (52%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MP+ I     FL+ A    A SV      + V F VRCS +LYTL   D   A+ LK  L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 275 PPGLXVK 295
           PPGL V+
Sbjct: 61  PPGLSVQ 67


>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 
          Length = 69

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/67 (43%), Positives = 35/67 (52%)
 Frame = +2

Query: 95  MPRXIXXXXXFLIKAXXXXAXSVXXXXXPEXVXFXVRCSXFLYTLVXXDXXXAEXLKXXL 274
           MP+ I     FL+ A    A SV      + V F VRCS +LYTL   D   A+ LK  L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 275 PPGLXVK 295
           PPGL V+
Sbjct: 61  PPGLSVQ 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,119
Number of Sequences: 28952
Number of extensions: 65256
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)