Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O10
         (1306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    34   0.18 
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    29   5.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   6.7  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    29   6.7  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    29   6.7  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    29   6.7  

>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
            transfer protein (LTP) family protein similar to
            SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
            Lycopersicon esculentum, proline-rich cell wall protein
            [Medicago sativa] GI:3818416; contains Pfam profile
            PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 26/99 (26%), Positives = 28/99 (28%)
 Frame = +2

Query: 797  HXLSXPPLVLPXXXPPPXXGAXXTPPXNXTXPXPTRXPXAXXXXXXXXXXXXLXXIXXFP 976
            H    PP+V P   PPP      T P   T   PT  P                     P
Sbjct: 109  HPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPPTPC----P 164

Query: 977  PPTLXXXPXARPPXTGXXPQXLXXXCVTXXXSPPGPCLP 1093
            PPT    P    P T   P            +PP P  P
Sbjct: 165  PPTPTPTPPVVTPPTPTPPVITPPTPTPPVVTPPTPTPP 203


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/58 (27%), Positives = 18/58 (31%)
 Frame = +3

Query: 693 PPGXPPXSXXXATXXSXXXRXPPXYPPXALPAXAXTXSXXPXSSXXXSXHXRPXAPXP 866
           PP  PP S    T      R PP  PP   P    T      ++        P  P P
Sbjct: 99  PPPPPPLSAITTTGHHHHRRSPPPPPPPPPPPPTITPPVTTTTAGHHHHRRSPPPPPP 156


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 25/94 (26%), Positives = 28/94 (29%)
 Frame = +2

Query: 812  PPLVLPXXXPPPXXGAXXTPPXNXTXPXPTRXPXAXXXXXXXXXXXXLXXIXXFPPPTLX 991
            PP  LP   PPP      TPP   + P P+  P              +      PPP   
Sbjct: 403  PPPSLPS--PPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPP-PPPPPP 459

Query: 992  XXPXARPPXTGXXPQXLXXXCVTXXXSPPGPCLP 1093
              P   PP     P            SPP P  P
Sbjct: 460  PPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPP 493


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
            gi|10880495|gb|AAG24277
          Length = 176

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 18/69 (26%), Positives = 20/69 (28%)
 Frame = +2

Query: 827  PXXXPPPXXGAXXTPPXNXTXPXPTRXPXAXXXXXXXXXXXXLXXIXXFPPPTLXXXPXA 1006
            P   PPP      +PP   T P P   P                     PPP +   P A
Sbjct: 47   PVSAPPP---VTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPA 103

Query: 1007 RPPXTGXXP 1033
             PP     P
Sbjct: 104  TPPPVATPP 112


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
            gi|10880495|gb|AAG24277
          Length = 191

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 18/69 (26%), Positives = 20/69 (28%)
 Frame = +2

Query: 827  PXXXPPPXXGAXXTPPXNXTXPXPTRXPXAXXXXXXXXXXXXLXXIXXFPPPTLXXXPXA 1006
            P   PPP      +PP   T P P   P                     PPP +   P A
Sbjct: 47   PVSAPPP---VTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPPPVASPPPA 103

Query: 1007 RPPXTGXXP 1033
             PP     P
Sbjct: 104  TPPPVATPP 112


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
            PF00069: Protein kinase domain
          Length = 710

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 24/97 (24%), Positives = 27/97 (27%)
 Frame = +2

Query: 803  LSXPPLVLPXXXPPPXXGAXXTPPXNXTXPXPTRXPXAXXXXXXXXXXXXLXXIXXFPPP 982
            L+ PP   P    PP       PP +   P  T  P                     PPP
Sbjct: 83   LTPPPSSPPPPDAPPPIPIVFPPPIDSPPPESTNSPPPPEVFEPPPPPADEDESPPAPPP 142

Query: 983  TLXXXPXARPPXTGXXPQXLXXXCVTXXXSPPGPCLP 1093
                 P A  P  G  P+           SPP P  P
Sbjct: 143  PEQLPPPASSPQGG--PKKPKKHHPGPATSPPAPSAP 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,196
Number of Sequences: 28952
Number of extensions: 143950
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3393307944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)