Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O09
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38830.1 68415.m04771 tumor susceptibility protein-related co...    29   4.1  
At2g46870.1 68415.m05849 DNA-binding protein, putative similar t...    29   5.4  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    28   9.5  
At1g61940.1 68414.m06987 F-box family protein / tubby family pro...    28   9.5  

>At2g38830.1 68415.m04771 tumor susceptibility protein-related
           contains weak similarity to Swiss-Prot:Q99816 tumor
           susceptibility gene 101 protein [Homo sapiens]
          Length = 331

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 152 FQRENARKVNIQFCI--ALKWPSRTVRIPKSTISLTTWAHATY 274
           F   N  KV + FC+  +L+  S T ++P  T+ LT W H  Y
Sbjct: 58  FNHNNGAKVQL-FCLEGSLRIRSSTTQLP--TVQLTIWIHENY 97


>At2g46870.1 68415.m05849 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857, RAV2 GI:3868859; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 310

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 664 GSGGRCGRFFLAXMTRPNAPGXRXFAYWALFP 759
           G  GR  R F+    RP  P    FA  A+FP
Sbjct: 125 GDSGRDSRLFIDWRRRPKVPDHPHFAAGAMFP 156


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1298

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 364  DLHNFINIQIPVHICQFSC 308
            ++HNF+ I+  +H+C F C
Sbjct: 1077 EVHNFMEIEKGIHLCIFDC 1095


>At1g61940.1 68414.m06987 F-box family protein / tubby family
           protein similar to putative Tub family protein
           GI:4309738 from [Arabidopsis thaliana]
          Length = 265

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 60  CIVKENVSNEKFYLYL 107
           C VK N SN+ FYLYL
Sbjct: 71  CYVKRNRSNQTFYLYL 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,834
Number of Sequences: 28952
Number of extensions: 250853
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)