Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O08
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.4  
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    29   5.6  
At1g19100.1 68414.m02376 ATP-binding region, ATPase-like domain-...    28   9.7  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 569  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 447
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
            family protein contains Pfam domains PF00567: Tudor
            domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 232  IXXSSCMMQSAXSXXXKXXHWXPXXRPAARSHHEALRLTPRPSRPGGREPAXLKNAXXHN 53
            I  ++ M+Q   +   K   W P  + AA    E  +   R SR G  E   +++    N
Sbjct: 917  ISVNAAMLQEGIARMEKRRRWEPKDKQAALDALEKFQDEARKSRTGIWEYGDIQSDDEDN 976

Query: 52   AKVXKEG 32
              V K G
Sbjct: 977  VPVRKPG 983


>At1g19100.1 68414.m02376 ATP-binding region, ATPase-like
           domain-containing protein-related low similarity to
           microrchidia [Homo sapiens] GI:5410257; contains
           non-consensus splice site (GC) at intron 8
          Length = 663

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 629 KAXLMNMAVNEEVGIDLVRSGQVETLAV-GSVEARGSKSVDEHASVDPFSHPAR 471
           K  + NM +N +  ++L      E + + GS++  GSK V++H +   FS+  R
Sbjct: 304 KVIIYNMWLNSDAKLELDFDSVAEDILIEGSIKKTGSKIVNDHIA-SRFSYSLR 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,621
Number of Sequences: 28952
Number of extensions: 210079
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)