Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O06
(1005 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 67 4e-12
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 66 6e-12
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 66 6e-12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.78
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 4e-12
Identities = 48/123 (39%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +3
Query: 168 KLTTTGHXIYKCGGIEXRTIDKFEEGGXRNGXRILXICXGIGXLKAERERGIXIDXXSLE 347
K TTTGH IYKCGGI+ RTI+KFE+ G + LKAERERGI ID +
Sbjct: 20 KSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWK 79
Query: 348 LS----NXXVL-CYXHRCLLXTXISSXT*SXEALXXDCAVLXVXGXXGXIPXXGIXTXXQ 512
N V+ HR + I+ + DCAVL + G G GI Q
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGTS------QADCAVLIIGGGTGEF-EAGISKDGQ 132
Query: 513 XRE 521
RE
Sbjct: 133 TRE 135
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 66.5 bits (155), Expect = 6e-12
Identities = 47/123 (38%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +3
Query: 168 KLTTTGHXIYKCGGIEXRTIDKFEEGGXRNGXRILXICXGIGXLKAERERGIXIDXXSLE 347
K TTTGH IYKCGGI+ RTI+KFE+ G + LKAERERGI ID +
Sbjct: 20 KSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWK 79
Query: 348 LS----NXXVL-CYXHRCLLXTXISSXT*SXEALXXDCAVLXVXGXXGXIPXXGIXTXXQ 512
N V+ HR + I+ + DCA+L + G G GI Q
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGTS------QADCAILIIGGGTGEF-EAGISKDGQ 132
Query: 513 XRE 521
RE
Sbjct: 133 TRE 135
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 66.5 bits (155), Expect = 6e-12
Identities = 47/123 (38%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +3
Query: 168 KLTTTGHXIYKCGGIEXRTIDKFEEGGXRNGXRILXICXGIGXLKAERERGIXIDXXSLE 347
K TTTGH IYKCGGI+ RTI+KFE+ G + LKAERERGI ID +
Sbjct: 20 KSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWK 79
Query: 348 LS----NXXVL-CYXHRCLLXTXISSXT*SXEALXXDCAVLXVXGXXGXIPXXGIXTXXQ 512
N V+ HR + I+ + DCA+L + G G GI Q
Sbjct: 80 FETPKYNVTVIDAPGHRDFIKNMITGTS------QADCAILIIGGGTGEF-EAGISKDGQ 132
Query: 513 XRE 521
RE
Sbjct: 133 TRE 135
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.78
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSPXPP 962
PPP P S S P P P + G PP +P PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +3
Query: 780 PXNPGXPXXSPPPXXHXPXWHPXTXX-AQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSPX 956
P P P +PP P P A + P P P A G PP +P
Sbjct: 418 PTPPSLPPSAPPSLP--PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 957 PP 962
PP
Sbjct: 476 PP 477
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 255
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 268
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 281
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 294
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 307
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 320
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPPXXXVSP 953
PPP H P H P P P H G PPP P
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPPPMHHEP 333
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 810 PPPXXHXPXWHPXTXXAQSXPSXPXPXPXAXHSXTGXXCPPP 935
PPP H P H P P P H G PPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE-PGEHMPPP 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,365
Number of Sequences: 5004
Number of extensions: 26857
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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