Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O06
         (1005 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    66   4e-13
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    65   8e-13
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    28   0.15 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 66.5 bits (155), Expect = 4e-13
 Identities = 49/123 (39%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
 Frame = +3

Query: 168 KLTTTGHXIYKCGGIEXRTIDKFEEGGXRNGXRILXICXGIGXLKAERERGIXID--XXS 341
           K TTTGH IYKCGGI+ RTI+KFE+     G         +  LKAERERGI ID     
Sbjct: 20  KSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79

Query: 342 LELSNXXVLCY---XHRCLLXTXISSXT*SXEALXXDCAVLXVXGXXGXIPXXGIXTXXQ 512
            E S   V       HR  +   I+  +        DCAVL V    G     GI    Q
Sbjct: 80  FETSKYYVTIIDAPGHRDFIKNMITGTS------QADCAVLIVAAGTGEF-EAGISKNGQ 132

Query: 513 XRE 521
            RE
Sbjct: 133 TRE 135


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 65.3 bits (152), Expect = 8e-13
 Identities = 48/123 (39%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
 Frame = +3

Query: 168 KLTTTGHXIYKCGGIEXRTIDKFEEGGXRNGXRILXICXGIGXLKAERERGIXID--XXS 341
           K TTTGH IYKCGGI+ RTI+KFE+     G         +  LKAERERGI ID     
Sbjct: 20  KSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79

Query: 342 LELSNXXVLCY---XHRCLLXTXISSXT*SXEALXXDCAVLXVXGXXGXIPXXGIXTXXQ 512
            E +   V       HR  +   I+  +        DCAVL V    G     GI    Q
Sbjct: 80  FETAKYYVTIIDAPGHRDFIKNMITGTS------QADCAVLIVAAGIGEF-EAGISKNGQ 132

Query: 513 XRE 521
            RE
Sbjct: 133 TRE 135


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +3

Query: 297 LKAERERGIXID--XXSLELSNXXVLCY---XHRCLLXTXISSXT*SXEALXXDCAVLXV 461
           LKAERERGI ID      E S   V       HR  +   I+  +        DCAVL V
Sbjct: 6   LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS------QADCAVLIV 59

Query: 462 XGXXGXIPXXGIXTXXQXRE 521
               G     GI    Q RE
Sbjct: 60  AAGTGEF-EAGISKNGQTRE 78


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 337 ALWNSQTXXYYVTXIXA 387
           ALW  +T  YYVT I A
Sbjct: 3   ALWKFETSKYYVTIIDA 19


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +1

Query: 118 KKLXINIVVIWTGRLXLSXPPXVI 189
           +++ + + ++W G   +S PP +I
Sbjct: 156 RRMIVYVSLVWLGAACISLPPLLI 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,037
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)