Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O05
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.015
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +1

Query: 229 LVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 405
           +V+  QG D  + G N SAE+A +  +    +G ++V+ +RLVE   +   K      K 
Sbjct: 39  IVSEKQGIDENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKP 97

Query: 406 YMKKLVAKL-EEKAPDQ 453
           Y+KK+   + EE  PD+
Sbjct: 98  YIKKVKEHMKEEGCPDE 114


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 599 LRTIKVSIFHHGNHAITIHRLPSKEXEVP*TCPRMSFITLFMFVLNTSTWSG 444
           ++T+ + + HH  HA T+ ++ +KE     T  R++F+ L   VL  S   G
Sbjct: 23  VQTLSLWLIHHRKHAKTVVQVWNKEIRKVKTSKRLTFMYLANDVLQNSKKKG 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,909
Number of Sequences: 59808
Number of extensions: 414118
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)