Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O05
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 85 5e-17
At3g05540.1 68416.m00607 translationally controlled tumor family... 66 4e-11
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 34 0.11
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 30 2.4
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 30 2.4
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 28 9.7
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 85.4 bits (202), Expect = 5e-17
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Frame = +1
Query: 130 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 300
M +Y+D++TGDE+ SD++ K ++ +++EV G+ VT D+ I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 301 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 480
D + + VDIV RL E + DKK + Y+K Y+K L KL E+ DQ VFK +
Sbjct: 60 VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115
Query: 481 KVMK 492
K
Sbjct: 116 GATK 119
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 65.7 bits (153), Expect = 4e-11
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Frame = +1
Query: 130 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 303
M +Y+DI+TGDE+ SD++ K ++ G L ++EG NPS EE DEG
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47
Query: 304 DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 483
D VDI+ RL E +F DKK + +++K Y+K+L KL+ + E+FK ++
Sbjct: 48 DDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIES 103
Query: 484 VMK 492
K
Sbjct: 104 ATK 106
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 399 QRLYEKISSKIGREGA*PS*SI*NKHEQSNERHPRAGLRNFXFFTGESMDC-DGMVAMME 575
+R +++S K+ E + KH +S + + L++F FF GESM+ +G +
Sbjct: 79 KRYIKQLSPKLDSENQ----ELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAY 134
Query: 576 YRDFDGTQIPIMMFFKHGLEEEK 644
YR +G P ++ +GL+E K
Sbjct: 135 YR--EGATDPTFLYLAYGLKEIK 155
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 157 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 324
G+ S K +++D V+ +T G +T +G+ EGF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +1
Query: 247 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 426
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 427 KL------EEKAPDQVEVFKTNMN 480
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Frame = +1
Query: 247 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 426
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162
Query: 427 KL------EEKAPDQVEVFKTNMN 480
+ E+ PD E+ K M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 240 SRHQPTGHFVNNFIDQFHFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 85
SRHQP+ V D E T+ + + +LHFDG N N N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,043
Number of Sequences: 28952
Number of extensions: 308715
Number of successful extensions: 749
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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