Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 295 3e-80
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.30
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.53
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 31 1.6
03_03_0091 - 14371528-14372661 30 2.8
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.7
07_01_0275 - 2023651-2023755,2025324-2025452,2025555-2025625,202... 29 6.5
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 6.5
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 6.5
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167 28 8.6
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 295 bits (724), Expect = 3e-80
Identities = 130/194 (67%), Positives = 160/194 (82%)
Frame = +1
Query: 154 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 333
R+G A F + ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A E
Sbjct: 23 RKGPA--RFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80
Query: 334 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 513
G+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HN
Sbjct: 81 GMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHN 140
Query: 514 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 693
PD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VR
Sbjct: 141 PDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVR 200
Query: 694 GVAMNPVXHPHGGG 735
GVAMNPV HPHGGG
Sbjct: 201 GVAMNPVEHPHGGG 214
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 111 AQRKGAGSVFVSHTKKRKGAPKLRSL 188
AQRKGAGSVF SHT RKG + RSL
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPARFRSL 32
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 603 WRWTY*QTYFESWKGIPQVQG 665
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 620 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 441
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 440 RL 435
R+
Sbjct: 71 RV 72
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 780 DVPLLTVKPYLYGDGTTTVRMLYRVHGNTTY 688
D ++TVKP L+ TTT+R L HG +
Sbjct: 857 DSNIMTVKPRLHHSATTTIRWLTDAHGKQCF 887
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 608 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 435
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 434 HTMVPSGIAPTGITFP 387
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.7
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 480 LWKLRHCDWT 509
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>07_01_0275 -
2023651-2023755,2025324-2025452,2025555-2025625,
2025717-2025803,2026000-2026494,2026588-2026813
Length = 370
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 681 AICTWCCHEPCXASSRWWYHH 743
A C+WCC A+ RW HH
Sbjct: 49 ACCSWCCRRR-SATQRWQNHH 68
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 6.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 603 WRWTY*QTYFESWKGIPQVQG 665
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 511 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 422
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
Length = 214
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 710 GFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLL 576
G + P +G + ++T +L LP ++ L +R PT+PLL
Sbjct: 91 GLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGPTLPLL 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,365,531
Number of Sequences: 37544
Number of extensions: 525256
Number of successful extensions: 1359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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