Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   8.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 453 HFLFKIAHNGTLRHSSNRHHI 391
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 453 HFLFKIAHNGTLRHSSNRHHI 391
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 453 HFLFKIAHNGTLRHSSNRHHI 391
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 453 HFLFKIAHNGTLRHSSNRHHI 391
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 502 IGHNPDAKRTRVKLPSGAKKVL 567
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 723  SRWWYHHHIGK 755
            S W YHH++ K
Sbjct: 1675 STWGYHHNVNK 1685


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 169 LLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPL 267
           LLN     +A   G I     DI HDPG  A L
Sbjct: 30  LLNGKXDLFARCMGGINSRNMDIEHDPGLAAVL 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,143
Number of Sequences: 438
Number of extensions: 5284
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)