Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O04
(880 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 293 1e-79
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 293 1e-79
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 292 2e-79
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 78 7e-15
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 78 7e-15
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 50 3e-06
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.44
At4g00450.1 68417.m00062 expressed protein 30 2.3
At2g41230.1 68415.m05091 expressed protein 30 2.3
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 5.4
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 5.4
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 29 5.4
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 7.2
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 293 bits (719), Expect = 1e-79
Identities = 129/194 (66%), Positives = 159/194 (81%)
Frame = +1
Query: 154 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 333
R+G A F Y ER+GY+KG+V +IIHDPGRGAPLA V FR P+++ +KELF+A E
Sbjct: 24 RKGPA--KFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAE 81
Query: 334 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 513
G+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HN
Sbjct: 82 GMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHN 141
Query: 514 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 693
P++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VR
Sbjct: 142 PESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVR 201
Query: 694 GVAMNPVXHPHGGG 735
GVAMNPV HPHGGG
Sbjct: 202 GVAMNPVEHPHGGG 215
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/27 (74%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 111 AQRKGA-GSVFVSHTKKRKGAPKLRSL 188
AQRKGA GSVF SHT RKG K RSL
Sbjct: 7 AQRKGAAGSVFKSHTHHRKGPAKFRSL 33
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 293 bits (718), Expect = 1e-79
Identities = 131/194 (67%), Positives = 160/194 (82%)
Frame = +1
Query: 154 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 333
R+G A F + ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAE 80
Query: 334 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 513
G+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HN
Sbjct: 81 GMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHN 140
Query: 514 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 693
PD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VR
Sbjct: 141 PDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVR 200
Query: 694 GVAMNPVXHPHGGG 735
GVAMNPV HPHGGG
Sbjct: 201 GVAMNPVEHPHGGG 214
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +3
Query: 111 AQRKGAGSVFVSHTKKRKGAPKLRSL 188
AQRKGAGSVF SHT RKG K RSL
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSL 32
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 292 bits (716), Expect = 2e-79
Identities = 129/194 (66%), Positives = 159/194 (81%)
Frame = +1
Query: 154 RRGKALLNFAL*XYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 333
R+G A F + ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 23 RKGPA--KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAE 80
Query: 334 GLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHN 513
G+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HN
Sbjct: 81 GMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHN 140
Query: 514 PDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 693
PD +R+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VR
Sbjct: 141 PDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVR 200
Query: 694 GVAMNPVXHPHGGG 735
GVAMNPV HPHGGG
Sbjct: 201 GVAMNPVEHPHGGG 214
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +3
Query: 111 AQRKGAGSVFVSHTKKRKGAPKLRSL 188
AQRKGAGSVF SHT RKG K RSL
Sbjct: 7 AQRKGAGSVFKSHTHHRKGPAKFRSL 32
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 78.2 bits (184), Expect = 7e-15
Identities = 45/117 (38%), Positives = 66/117 (56%)
Frame = +1
Query: 385 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 564
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 565 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVXHPHGGG 735
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 78.2 bits (184), Expect = 7e-15
Identities = 45/117 (38%), Positives = 66/117 (56%)
Frame = +1
Query: 385 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 564
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 565 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVXHPHGGG 735
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 535 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM-NP 711
+ LP +KK + S R M+G +A G + K K +KRN W VRGVAM NP
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNP 430
Query: 712 VXHPHGGGT 738
V HPHGG T
Sbjct: 431 VEHPHGGRT 439
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 444 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 286
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 456 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 280
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 279 VYNSQRCTSTRVMDYILNN 223
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At2g41230.1 68415.m05091 expressed protein
Length = 88
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -3
Query: 740 MVPPP*GCXTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLL 573
+ P P G + T R+ L L+L L LP F L PPPAT+ +PLLL
Sbjct: 12 VTPKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLL 64
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +1
Query: 391 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 558
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 559 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 654
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -2
Query: 654 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 478
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 477 TCQTTSITHF-LFKIAHNGTLRHSSN 403
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 746 MVMVPPP*GCXTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMP 582
++ VPPP G M P+ YGQ LP +G+ PP A +P P
Sbjct: 608 VMRVPPPPGSQFSHMQVPQPYGQ-----------LPPLSMGMMQPPPMAEMPPPP 651
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 603 WRWTY*QTYFESWKGIPQVQG 665
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,205,498
Number of Sequences: 28952
Number of extensions: 398762
Number of successful extensions: 1051
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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