Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O03
         (1415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    30   4.2  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    30   4.2  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    30   4.2  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   5.6  
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    29   5.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   9.8  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    29   9.8  

>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
            transfer protein (LTP) family protein similar to
            SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
            Lycopersicon esculentum, proline-rich cell wall protein
            [Medicago sativa] GI:3818416; contains Pfam profile
            PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 22/87 (25%), Positives = 26/87 (29%)
 Frame = +2

Query: 962  PXRSGXNTPXSXXPSXPXXQXXXTPTTTXXSXXAPPXLPHXXPXSXTXXXLXLXPXXPXP 1141
            P  S    P    PS P       P +T       P      P + T     + P  P P
Sbjct: 123  PPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTP 182

Query: 1142 RXXLPPXXTXXHXXEPPXXTRXXLTXP 1222
                PP  T      PP  T   +T P
Sbjct: 183  PVITPPTPTPP-VVTPPTPTPPVITPP 208


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
            protodermal factor 1 [Arabidopsis thaliana]
            gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 1009 SXSPTXXXSXXHXXLVXXPSXSPTXQXPLXHXXXPPXXPXXPPPXXXPAAXXDQXPPXG 1185
            S +PT   +  H      PS +PT   P  +   PP  P  P     P+      PP G
Sbjct: 77   SHTPTPS-TPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSG 134


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
            protodermal factor 1 [Arabidopsis thaliana]
            gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 1009 SXSPTXXXSXXHXXLVXXPSXSPTXQXPLXHXXXPPXXPXXPPPXXXPAAXXDQXPPXG 1185
            S +PT   +  H      PS +PT   P  +   PP  P  P     P+      PP G
Sbjct: 77   SHTPTPS-TPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSG 134


>At5g58160.1 68418.m07280 formin homology 2 domain-containing protein
            / FH2 domain-containing protein low similarity to
            SP|Q05858 Formin (Limb deformity protein) {Gallus
            gallus}; contains Pfam profile PF02181: Formin Homology
            2(FH2) Domain
          Length = 1307

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 1063 PSXSPTXQXPLXHXXXPPXXPXXPPPXXXP 1152
            P   P    P+ H   PP  P  PPP   P
Sbjct: 711  PPAPPAPPTPIVHTSSPPPPPPPPPPPAPP 740


>At5g04970.1 68418.m00526 pectinesterase, putative contains similarity
            to pectinesterase from Vitis vinifera GI:15081598, Prunus
            persica SP|Q43062; contains Pfam profile PF01095
            pectinesterase
          Length = 624

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +1

Query: 1015 SPTXXXSXXHXXLVXXPSXSPTXQXPLXHXXXPPXXPXXPPPXXXPAAXXDQXP 1176
            SPT   S         PS  P  Q P      PP  P   PP   P     Q P
Sbjct: 23   SPTRPPSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPPTQPPTPPPSQSP 76


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = +3

Query: 948  RPXXLPXVXXXTLPCPXXPLXLLXNXXXLXXPLAPRXXPLRXSHXXXPXXXQXSSSXSPP 1127
            RP  +  +   +LP P  P  +      L  P  P   P   S    P       S  PP
Sbjct: 395  RPPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPP 454

Query: 1128 XPP 1136
             PP
Sbjct: 455  PPP 457


>At1g49750.1 68414.m05579 leucine-rich repeat family protein contains
            leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +1

Query: 1063 PSXSPTXQXPLXHXXXPPXXPXXPPPXXXPAAXXDQXPP 1179
            PS SP  +        PP  P  PPP   P       PP
Sbjct: 48   PSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPP 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,674
Number of Sequences: 28952
Number of extensions: 72664
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3730135104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)