Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O02
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.057
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   8.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 566  PPXXXX*NPPPPXXXXPPPPPLTXXXGGPP 477
            PP      PPPP    PPPP       GPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = -2

Query: 603  SPXXPXFXXXPPPPPXXXVKPP---PPXXXXPPPXP 505
            S   P      PPPP   V PP   PP    PP  P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 603  SPXXPXFXXXPPPPPXXXVKPPPPXXXXPPPXP 505
            +P  P      PPPP     P  P    PPP P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = -3

Query: 569  PPPXXXX*NPPPPXXXXPPPPPLTXXXGGPPXKKXXFPXSXPLFFLGKNNXPPP 408
            PP       PP      PPPPP++     PP      P S P    G  + PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSV----PP------PPSAPPMPAGPPSAPPP 1733


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 182 GGXKKXRGGGXXXKKGXKGGXXKKXGXXGGXXXKKXGKKXG 304
           GG    RGGG    +G +GG     G  GG    + G K G
Sbjct: 30  GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 506 GXGGGXXXSGGGGFTXXXGGGGGXXXKXGXXG 601
           G GGG   + GGG     GG GG     G  G
Sbjct: 27  GFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -2

Query: 600 PXXPXFXXXPPPPPXXXVK---PPPPXXXXPPPXP 505
           P  P     PPPPP   V    PPPP    PPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -2

Query: 573 PPPPPXXXVKPPPPXX-XXPPPXPFDGXXXGSP 478
           PPPPP   V  P P     PPP P  G     P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 600 PXXPXFXXXPPPPPXXXVKPPPPXXXXPPPXP 505
           P  P      P P    V PP P    PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
 Frame = -2

Query: 618 LXLFXSPXXPXFXXXPPPPPXXXVKPPPPXX--XXPPPXPFDGXXXGSP 478
           L L   P  P     P P P     PPP       PPP P  G     P
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 573 PPPPPXXXVKPPPPXXXXPPP 511
           PPPPP    +PP      PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 573 PPPPPXXXVKPPPPXXXXPPP 511
           PPPPP      PP     PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 542 PPPPXXXXPPPPPLTXXXGG 483
           PPPP    PPPPPL    GG
Sbjct: 945 PPPP----PPPPPLVSAAGG 960


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = -2

Query: 600  PXXPXFXXXPPPPPXXXVKPPPPXXXXPP-PXPFDG 496
            P  P     P P P   V P PP    PP P P  G
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +2

Query: 506 GXGGGXXXSGG--GGFTXXXGGGGGXXXKXGXXG 601
           G GGG    GG  GGF    GG GG     G  G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 455 GGKXFFXXGDPXXXPSKGXGGGXXXSGGGGFTXXXGGGGG 574
           GG  FF   DP     +  G     +GGGG     GG GG
Sbjct: 111 GGAQFFSASDPNDIFERVFGHAF--AGGGGMGGGMGGMGG 148


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -3

Query: 542 PPPPXXXXPPPPPL--TXXXGGPPXKKXXFPXSXPLFFLGKNNXPP 411
           P P     PPPPP+  +     PP        S P+ ++ +   PP
Sbjct: 736 PTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESPP 781


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 518  PPPPPLTXXXGGPP 477
            PPPPP+     GPP
Sbjct: 1883 PPPPPMALPKAGPP 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.151    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,755
Number of Sequences: 5004
Number of extensions: 22971
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)