Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_O01
(910 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 52 5e-07
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.079
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.10
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.10
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 34 0.14
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.18
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.42
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 32 0.56
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.56
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.74
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 31 0.97
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 31 0.97
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 31 1.3
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.3
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.7
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 30 2.2
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 3.0
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39) 29 5.2
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 29 6.9
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 6.9
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 9.1
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 87.0 bits (206), Expect = 2e-17
Identities = 49/95 (51%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = +3
Query: 471 SRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDXKTXFWRYFXXXXXXXXXX 650
S G LSFWRGN AN IRYFPTQALNFAFKD+ K +F F
Sbjct: 66 SEGFLSFWRGNLANCIRYFPTQALNFAFKDQVKALFKPKKTDSNAI--KFSKNIASGGAA 123
Query: 651 XXTSLCFVYPLDFARTRLAXD--VGKGDGQRXFSG 749
SL FVY LD+ RTRLA D VGK G+R F+G
Sbjct: 124 GAMSLFFVYSLDYCRTRLANDAKVGKKGGERQFNG 158
Score = 54.0 bits (124), Expect = 2e-07
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 769 KIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXRGML 888
K SDGL+GLYRGF +S GII+YR YFG Y+T + +L
Sbjct: 165 KTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPIL 204
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 301 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKGAG 477
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 478 -VSFHSG 495
+SF G
Sbjct: 69 FLSFWRG 75
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 52.4 bits (120), Expect = 5e-07
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 274 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 450
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 451 FVRIPKGAGV 480
+R + G+
Sbjct: 61 TMRTYRAEGI 70
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = +1
Query: 307 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGV 480
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I K G+
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGI 87
Score = 37.5 bits (83), Expect = 0.015
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 477 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 572
G+L +++GN NVIR FP A+ FA ++YK+
Sbjct: 86 GILGYFKGNGTNVIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 37.5 bits (83), Expect = 0.015
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 322 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGV 480
GG A VS+TA AP++R+K+LLQVQ A+ GIV F + + G+
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGI 189
Score = 37.1 bits (82), Expect = 0.020
Identities = 27/77 (35%), Positives = 35/77 (45%)
Frame = +3
Query: 477 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDXKTXFWRYFXXXXXXXXXXXX 656
G+ S WRGN ANVI+ P + F +K K+ L G D K
Sbjct: 188 GIKSLWRGNGANVIKIAPESGIKFFAYEKAKK--LVGSDTKALGVTDRLLAGSMAGVASQ 245
Query: 657 TSLCFVYPLDFARTRLA 707
TS +YPL+ +TRLA
Sbjct: 246 TS---IYPLEVLKTRLA 259
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 772 IFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXR 879
I++ +G+ YRG S+ GII Y YET +
Sbjct: 276 IYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLK 311
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 35.1 bits (77), Expect = 0.079
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +3
Query: 471 SRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDXKTXFWRYFXXXXXXXXXX 650
+ GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 23 NEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQTSSPA--------INKLVAGSLA 74
Query: 651 XXTSLCFVYPLDFARTRLAXDVGKGDG 731
T+ YPLD R+RLA V + G
Sbjct: 75 GMTACACTYPLDMVRSRLAFQVAQDQG 101
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 313 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGV 480
F+ GG++ AVS+T P++ V+ +Q ++ + +Y ++ V + K G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGI 228
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 757 NCIXKIFKSDGLI-GLYRGFGVSVXGIIIYRXSYFGXYETXRGML 888
N + ++K DG+ GLYRG ++ + FG YE + L
Sbjct: 217 NTLVNVYKDDGIRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFL 261
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 271 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGI 441
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 442 VDAFVRIPKGAG 477
D F I K G
Sbjct: 79 KDCFRTILKEEG 90
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 34.7 bits (76), Expect = 0.10
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Frame = +1
Query: 289 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGI 441
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 442 VDAFVRIPKGAGV-SFHSGVV 501
+ V + K G+ + + G++
Sbjct: 70 LGTMVTLFKTEGMKTMYKGLI 90
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 34.3 bits (75), Expect = 0.14
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 751 LGNCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYE 870
+G + KI++ +GL G ++G G ++ I+ Y F YE
Sbjct: 594 VGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYE 633
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 477 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 572
GL +++GN N++R P A+ FA +++K+
Sbjct: 606 GLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 316 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGV-SFHS 492
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I + G+ + +
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTILREEGILALYK 213
Query: 493 GV 498
GV
Sbjct: 214 GV 215
Score = 32.3 bits (70), Expect = 0.56
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 295 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQV 393
+ + + FL GG SA ++++ +P+E VK+L QV
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV 88
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 477 GLLSFWRGNFANVIRYFPTQALNFA 551
G+ +FW+GN + IR FP A+ +A
Sbjct: 109 GIKAFWKGNGVSCIRLFPYSAVQYA 133
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 32.7 bits (71), Expect = 0.42
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 358 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGV 480
AP ERVK LLQVQ K+ RY+G+ D +++ + G+
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGL 216
Score = 29.1 bits (62), Expect = 5.2
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 751 LGNCIXKIFKSDGLIGLYRGFGVSVXGIII 840
LG+C+ +++++ GL G+++G G ++ +I
Sbjct: 203 LGDCLLQVYRTGGLRGVFKGLGPTMGREVI 232
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 32.3 bits (70), Expect = 0.56
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 757 NCIXKIFKSDGLIGLYRGFGVSVXGIIIY 843
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 32.3 bits (70), Expect = 0.56
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 757 NCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYE 870
+C+ K+F S+GL G +RG ++ I YFG ++
Sbjct: 302 DCLKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQ 339
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 313 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAGVS-FH 489
F +GGI+ +S P++ VK Q + +Y G D +I GVS F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFG 420
Query: 490 SGVV 501
G++
Sbjct: 421 QGLL 424
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.9 bits (69), Expect = 0.74
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 265 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIV 444
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 445 DAFVRIPKGAGV 480
D RI + AGV
Sbjct: 181 DCLRRIYREAGV 192
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKGAG-VSFHSGVV 501
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + G + + G++
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRA--VLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLL 978
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.5 bits (68), Expect = 0.97
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 325 GISAAVSKTAVAPIERVKLLLQVQH 399
G+S +KT AP+ER+K+L Q Q+
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN 87
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 757 NCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXR 879
N +I++ +G+ YRG+ ++ GI+ Y F YET +
Sbjct: 30 NAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCK 70
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 778 KSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXRGML 888
K++G+ L++G G ++ G+ R YF Y + ML
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 763 IXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXRGML 888
+ ++++ +G+ GLYRG ++ IY + G YE + +L
Sbjct: 63 LSRVYREEGVRGLYRGIFPALLRQAIYSSTRLGAYEPIKNLL 104
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 757 NCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYE 870
+C+ K+++S GL G ++G V+ I YFG YE
Sbjct: 80 DCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYFGVYE 117
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 319 AGGISAAVSKTAVAPIERVKLLLQ 390
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 673 CTPSTSHVPVSPXMSVREMASVXSPXLGNCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXS 852
CT T +V + + + + +C+ K K G++GLYRG + G +
Sbjct: 57 CTFPTEYVKTQLQLDEKAAKPIYRGPI-DCVKKTVKGHGVLGLYRGLSSLLYGSVPKASV 115
Query: 853 YFGXYE 870
F +E
Sbjct: 116 RFAVFE 121
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 492 WRGNFANVIRYFPTQALNFAFKDKYKQV 575
W G F++VI F A+N AF+++YK++
Sbjct: 282 WIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_27874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 714 HRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASS 595
+ RD RS+ +R++ RWL R R+P S+ R++S+
Sbjct: 6 NNNRDN-TRSQVRSRNSNRWLLRQQRQPQRHLSHKRSSSN 44
>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
Length = 258
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -2
Query: 753 EXRRXHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRH-HRRPDYQRSNARTASSXQHRRG 577
E R +G P + + R T+ T R P Y +S +TA + QH RG
Sbjct: 176 EPNRAQSGAKPNQDQNRSQLSAEASPTQPTVRKAEHSIEPNPSYSKSRGKTAQASQHSRG 235
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -2
Query: 717 RHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSNARTASSXQHRRGTPACT 562
R R RD RSR R + RR R +RS R S +HR + +CT
Sbjct: 321 RSRSRDRR-RSRSRERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCT 371
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 777 EDLXDAVSEXRRXHAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARTA 601
E L D + RR R+ + R +GG R+T+ ++H R +PD +R+ R
Sbjct: 843 EWLSDQWKDQRREKEEAARKWKRKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIP 902
Query: 600 SSXQHRRGTP 571
R+GTP
Sbjct: 903 -----RKGTP 907
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 661 LCASCTPSTSHVPVSPXMSVREMASVX-SPXLG--NCIXKIFKSDGLIGLYRGFGVSVXG 831
L +C ++P +++ + SP G +C +FK +G+ YR + +
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKEEGIRAFYRSYTTQLSM 61
Query: 832 IIIYRXSYFGXYETXRGML 888
I ++ +F YE R L
Sbjct: 62 NIPFQTLHFTVYEYARKAL 80
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 9.1
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Frame = -2
Query: 756 SEXRRXHAGHLPYRHRRRDGY-VRSRGGTRSTERWL--------RRHHRRPDYQRSNART 604
S RR + L R R R G R R +RS ER +R PD++ N T
Sbjct: 125 SPVRRRRSPSLERRSRSRSGSRERRRSPSRSPERRRERSFSNSPKRERHSPDHRNGNEGT 184
Query: 603 ASSXQHRRGTPACTCP 556
Q R TPA P
Sbjct: 185 RDRSQSRSPTPAKADP 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,012,427
Number of Sequences: 59808
Number of extensions: 398289
Number of successful extensions: 1781
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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