Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_O01
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   142   3e-36
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   142   3e-36

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  142 bits (345), Expect = 3e-36
 Identities = 69/106 (65%), Positives = 75/106 (70%)
 Frame = +3

Query: 432 QGYRRCLRPYPQGSRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDXKTXFW 611
           +G   C    P+  +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVD  T F 
Sbjct: 54  KGMIDCFVRIPK-EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 612 RYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAXDVGKGDGQRXFSG 749
           RYF            TSLCFVYPLDFARTRLA DVGK  G+R F+G
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG 158



 Score =  117 bits (281), Expect = 2e-28
 Identities = 54/68 (79%), Positives = 62/68 (91%)
 Frame = +1

Query: 274 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 453
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 454 VRIPKGAG 477
           VRIPK  G
Sbjct: 61  VRIPKEQG 68



 Score = 87.4 bits (207), Expect = 2e-19
 Identities = 38/53 (71%), Positives = 43/53 (81%)
 Frame = +1

Query: 751 LGNCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXRGMLXXPKXXP 909
           LGNC+ KIFK+DG+ GLYRGFGVSV GIIIYR +YFG Y+T RGML  PK  P
Sbjct: 159 LGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  142 bits (345), Expect = 3e-36
 Identities = 69/106 (65%), Positives = 75/106 (70%)
 Frame = +3

Query: 432 QGYRRCLRPYPQGSRGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDXKTXFW 611
           +G   C    P+  +G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVD  T F 
Sbjct: 54  KGMIDCFVRIPK-EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 612 RYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAXDVGKGDGQRXFSG 749
           RYF            TSLCFVYPLDFARTRLA DVGK  G+R F+G
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG 158



 Score =  117 bits (281), Expect = 2e-28
 Identities = 54/68 (79%), Positives = 62/68 (91%)
 Frame = +1

Query: 274 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 453
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 454 VRIPKGAG 477
           VRIPK  G
Sbjct: 61  VRIPKEQG 68



 Score = 87.4 bits (207), Expect = 2e-19
 Identities = 38/53 (71%), Positives = 43/53 (81%)
 Frame = +1

Query: 751 LGNCIXKIFKSDGLIGLYRGFGVSVXGIIIYRXSYFGXYETXRGMLXXPKXXP 909
           LGNC+ KIFK+DG+ GLYRGFGVSV GIIIYR +YFG Y+T RGML  PK  P
Sbjct: 159 LGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,802
Number of Sequences: 438
Number of extensions: 3358
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)