Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   194   1e-50
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.29 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   6.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.3  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  194 bits (473), Expect = 1e-50
 Identities = 102/229 (44%), Positives = 136/229 (59%), Gaps = 3/229 (1%)
 Frame = +3

Query: 201 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 380
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 381 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 560
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 561 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAQKLQITRXDQDXYAVHS 734
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A++  I R  QD +A+ S
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAISS 184

Query: 735 YXRSXXXXXXXXFVDELVPVPVPXKEGL-LLIFAEDEEYKXVXFEXLQN 878
           Y R+        F  E+VPV VP   G    +  EDEE K +  + L++
Sbjct: 185 YKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKS 233


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 441 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 554
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 226 LTADAITTSLRETLVENAAIAVNIGFILMLIILFPFKKIMIYSLQIYFEYSRT 68
           +T+D +  +LRETLV N A +  +   L   +     +I I +L IY E  +T
Sbjct: 229 ITSDDLKIALRETLVANDAFSKLLLPALFERLKASTVRIKIDALNIYIEACKT 281


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 401 CNICRFAKKYHMYNCKQSMC 460
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 637 MCTTNFTWEIVLKTQHKNYKLLDXIKMXMLSIVTXEV 747
           +  + + W +  KT+   YKL+    M + S+V  E+
Sbjct: 409 IAASGYVWHVGSKTERSRYKLMLDCVMIITSVVPSEL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,966
Number of Sequences: 5004
Number of extensions: 63375
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)